Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0853 ATGCCAATCCCTTCTGAGAGACACATGTTCCTTCACACTGGAAATGGATCTGGTGATTCTAGTCTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGGGGAGCAGACAAGGCAACACCCAAAACGGTAATGAAACTGATGGGAATTTCAGGACTTACTTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTCTGCATGGACAAAGCAACGTGACACACAAAATCTCCATAAACCCGGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAATGGAACTCATGTGAACAATTTAAACCTTGCCCCTCAGTCGAATAACAAAGATTTACACATCGGTGAGGCACTGCAGATGCAAATAGAGGTTCAAAGAAGACTAAACGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGGATAGAGGCTCAAGGAAAATACCTTCAAGCTGTGCTGGAGAAGGCTCAGGAAACACTTGGTAGACAAAATCTGGGAGTAGTAGGACTTGAAGCTGCAAAACTTCAACTTTCAGATCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAACTCGGCATTTTTAGAGCTAAAGGAGTTACAAGGATTTAGCACTCATCAAACACAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGCCTCACATCCTGTGAGGTGTCACAGAAAGAGCAAGAGATACAAAACGGAGGGATGAGCCTAAGACCCTTCAATGTCCACACATTCATGGAACGAAAGGAGCTCATAGAGGGTCCTAATCTCAACAACCTACCAAGCACTGACCTCAAATGGTGTGATCCAGTGAAGAACACCTTCCTTACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGAAAGAATCAGTTAAATCAATGGCTGAGAAAGTTTCTCAAGATTATGGACTGCCTTCATACTTTGCTGCACCAAAACTGGACCTAACCACTGAAGTCAAGAACAATAGAACGAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTAA 1131 0.4341 MPIPSERHMFLHTGNGSGDSSLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKSLHGQSNVTHKISINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHIGEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFLELKELQGFSTHQTQTNQPNDCSMDSCLTSCEVSQKEQEIQNGGMSLRPFNVHTFMERKELIEGPNLNNLPSTDLKWCDPVKNTFLTPLSRRSPSNLSMSIGLEGETENGSTIRKESVKSMAEKVSQDYGLPSYFAAPKLDLTTEVKNNRTSCKELDLNGFSWN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0853 376 Gene3D - 28 86 - -
Vra2g0853 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
Vra2g0853 376 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Vra2g0853 376 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
Vra2g0853 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 376 IPR044848 GO:0003700
Vra2g0853 376 PANTHER MYB-RELATED PROTEIN 2 1 376 - -
Vra2g0853 376 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Vra2g0853 376 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0853 Vra-Chr2 8009666 8012152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0853 61 376 G2-like Transcription Factor Family AT3G04030 50.606 1.03e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra2g0853 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0853 - - gmx:100805237 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0427 4 7212560 7215022 Vra2g0853 2 8009666 8012152 PCT