Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0848 ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCTAAATTCCAACACAATATCTACTTCTTCTTCTTCTTCATCTTTTTCTTCTTCTTTTTCCTTCACCCAGCATGAGCTTGTTCATGAAACCATCCAATTCTTGCCCATTAAGGCCTCAAAAGATGAAGACCACCATCAAAGTTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTCACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAACGGCATCGTGAGGTTGTTGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGAAGACTCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTTAACCAAGAGAGAAGGTTCTGGATTCCAACTCCAGCACAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATAAACCATCCAAGGGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCATTACAAGAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCACTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGCTCAATGCTCATCATCATCATGCATGA 969 0.4355 MECNVENNKNLYLHAPTFIEWLKPCSSPSYLNSNTISTSSSSSSFSSSFSFTQHELVHETIQFLPIKASKDEDHHQSFEVKEEKLEQVTVALHIGLPDSAKRHREVVDDDDEKMIFHVKEEEEDSSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDELNAHHHHA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0848 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vra2g0848 322 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 6 317 - -
Vra2g0848 322 PANTHER ZINC FINGER PROTEIN WIP2 6 317 IPR043584 GO:0003700|GO:0010468
Vra2g0848 322 Gene3D Classic Zinc Finger 196 288 - -
Vra2g0848 322 SMART c2h2final6 240 260 IPR013087 -
Vra2g0848 322 SMART c2h2final6 156 178 IPR013087 -
Vra2g0848 322 SMART c2h2final6 203 235 IPR013087 -
Vra2g0848 322 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Vra2g0848 322 Gene3D Classic Zinc Finger 155 178 - -
Vra2g0848 322 SUPERFAMILY beta-beta-alpha zinc fingers 44 178 IPR036236 -
Vra2g0848 322 SUPERFAMILY beta-beta-alpha zinc fingers 225 260 IPR036236 -
Vra2g0848 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 260 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0848 Vra-Chr2 7900737 7904187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0848 4 308 C2H2 Transcription Factor Family AT1G08290 57.396 1.06e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0848 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0848 - - gmx:100802773 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0848 2 7900737 7904187 Vra2g0848 2 7900737 7904187 ECH
Vra4g0420 4 7122597 7125506 Vra2g0848 2 7900737 7904187 PCT