Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0843 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGGATGAAGACAACAAAGGTAATTACGCGAGAGCGTTCCAACTTTACATGAACGCGTTGGAGTACTTTAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCTGTCCTCGACGATGGGCCCAGCGGCCCACCTTCTTCCGGGGATGCTGCCGTCGCTACCAGGCCCAAGACCAAGCCCAAGGACGGCGCGGGCGGCGATGGGGAGGATCCTGAACAGACCAAGCTCCGTGCCGGGCTCAACTCTGCCATCGTTAGAGAAAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGCTGGAGAGCGCCAAACAGGCTCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTTTTCACTGGTAAACGACGACCTTGGAGAGCCTTTTTGTTGTACGGACCACCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCAACAGAAGCTGATTCTACGTTCTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTTGAAATGGCTCGTGAAAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGCGAGGGTAACGAGAGTGAGGCTTCAAGACGAATTAAAACTGAAGTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTGGTTCTAGCGGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGCCAGCACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAATTTGACAGAAAGTGATTTTGAACATTTGGCCCGCAGGACTGAGGGGTTTTCAGGTTCAGATATAGCTGTCTGTGTCAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGCATGTGGATTCCATGTGGACCAAAGCAACATAGTGCAATACAAATTACAATGCAGGAGCTTGCGGCGAAAGGACTTGCTTCACAGATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGGCCGACCTCAATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGATAA 1302 0.4862 MYSNFKEQAIEYVKQAVDEDNKGNYARAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKPKDGAGGDGEDPEQTKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEVLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARRTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQHSAIQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLNVHERFTKEFGEEG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0843 433 Gene3D - 298 413 - -
Vra2g0843 433 Gene3D - 125 421 IPR027417 -
Vra2g0843 433 SMART AAA_5 162 298 IPR003593 -
Vra2g0843 433 CDD MIT_VPS4 4 76 IPR045253 -
Vra2g0843 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vra2g0843 433 PANTHER AAA DOMAIN-CONTAINING 1 433 - -
Vra2g0843 433 MobiDBLite consensus disorder prediction 96 110 - -
Vra2g0843 433 SMART smart 2 79 IPR007330 -
Vra2g0843 433 CDD AAA 133 296 - -
Vra2g0843 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Vra2g0843 433 MobiDBLite consensus disorder prediction 71 110 - -
Vra2g0843 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Vra2g0843 433 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 433 - -
Vra2g0843 433 Gene3D - 6 75 - -
Vra2g0843 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 428 IPR027417 -
Vra2g0843 433 SUPERFAMILY MIT domain 2 83 IPR036181 -
Vra2g0843 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0843 Vra-Chr2 7874374 7879013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0843 161 354 Calmodulin-binding Proteins AT3G56690 36.224 1.04e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0843 K12196 - gmx:100801165 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0843 2 7874374 7879013 Vra2g0843 2 7874374 7879013 ECH
Vra4g0418 4 7093371 7100146 Vra2g0843 2 7874374 7879013 ECH
Vra4g0418 4 7093371 7100146 Vra2g0843 2 7874374 7879013 PCT