Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0831 ATGAGCGGCGATGGTCGACGACGTGACCGGAGAGATAACAGAGCATCGAAAAAGCGGAAGCTGAACCGCAACCCCGAGGATGAACTCGAAGCTAAATTAGGGTTCGATCTGTTTTCAGAGGGTGAAAAGCGGCTCGGATGGCTACTCACTCTTGCATCCTCATCTGTTCAGGATGAAAACAGTTACAAAGAATACAGTTGTGTCGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAATTCAGATTTCGGCCTTACTTCTATGTAGCTACAAAGGTAGGCGAGAACATTCATGATAAAATGGAGATGGATGTTGAAGCATACCTGAGAAGACGTTACGAAGGTCGGATTGCTGATATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAATCATTTATCAGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAGAGATCTGATGCCTACTGTTGAAAGAAATAAGGCTAAGTCTGACACTGCAGAAGCCTTTGTATCCATGTCAACAGAAAGAAGAGAACATAGACCTCAGGACTTTCTAGATTGCTTGACTGATCTTCGAGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAACGGGGTTACACTTGAAAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGAGTTTGTGCATTTGACATTGAGACCACAAAACTTCCATTGAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCGTACATGGTAGATGGTCAGGGGTATTTAATCATAAATAGGGAGTGTGTCGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAAGTGACGAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTCTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTAGAACGAAGGGCAACCCATCTTGGGTTCAAAATGAGTGATGAATTGGGGTTCAAATGCGACACAAACCAAGGGGAATGTCGTGCCAGATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCTTGAAGGCTGTTACAAAAGCAAAGTTGGGATATGATCCAGTGGAGGTGCATCCTGAAGACATGGTTCGATTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATAAAACTTATGTTCATCCCTTTATATTCTCTCTTGCAACTATTATACCTATGCCACCCGACGAGGTTTTGCGCAAAGGTAGTGGAACCCTATGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCCAATGTTATATGCCCTAACAAACACCAGTCTGATACAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGACATCCCATCTAGTTTTACATTAGAGCCATCTGCTTTTCAGCAACTAATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGCAAGATGGATTTGGAATCTGTTTCTAATTATGATGAAGTACGAAATGCAATCATGGAAAAGCTTGTAAACTTACGAGATGTGCCAACACGTGAAGAATGTCCCCTCATTTATCACCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCATCAATTGTTACCGATGAAGTCTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGTAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCATTGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAAATAGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTTACCCCGCTATTCTGAGAAGAGGTCATCGAAATCCTTTCTTGACCTTCCCAAGTCAGAGCAAAAATCAAGACTGAAAGATCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAAATTCGTGAAGCAGGAATCTGCATGCGGGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATACGAATATAAAGGTCTCAATAAGGTCTGGAAGGGGAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAAGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTATTCTATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATAATTCAAAATGCCCGCTTGCTAGTAGAAAAAATAGGAAAACCACTTGAACTAGATACGGATGGTATTTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGACCCAAAGAAGAAGTTCACAATATCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAATATCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGGCCATACAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGAATTTTGATTAAGAAGCGATATGCTGTTTTTAATGATGACGGAACTCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCATCATTAGAAGAATGCTATTCAGCTGTTGCTTCGGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATCGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAAGCGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGTGAGCGTGCTATTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAAGTTTCATTGGAAGTTGCCATTCGTTCGATAATTGATTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAGATTGTCACTATTCCTGCTGCAATGCAAAAGGTTTCAAACCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCACAAAAAGGTTCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAAATAGTTGATGCCTTTAAATCAATGAACAAGAACAAGCACTCAGAAAAGCATAATGACTCAAATTGTGTCTCTCTTGTGATGGATGATGAGATTCTTAATGAGTTAGAGGACTTTGGAAACAAGGGTAGGAGTTCTACATACGGACCTAGACCAATTATAAGGCATTATGAAGCTAATAATGAACAAAATTCAAGGAAGCTCAGTGATCAACAAGATTTGGAGCAAGAGCATAGTAAACATAATAGCAGCAAGAAAAATCTACCTTCACCATTACAACAAGATGAAGCTTATGAAAAGGTAGACAGAAATGTAGATTATCAGGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAAATATTCTGGAAAGAAGAAAGAAGCAAAGATTGGAGAAATCAAAGATATCTAATCGCATGAATGGTGTTTCTGAACAAATGAATGGTAAGAGGAATCTAGGAAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACGAAGTGTCATTGGCAGATAATACAATTAGTTCCCAGTTCACTGATAGGCCAATTTTTTGCTTGGGTGGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCCAGAGTCTTTTACCTCAATTCAAGATCTCCAATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGAATCTTCCTCATGGAAGGCTGAATTATAACTTATATGAGGTCTCAATTAGTGAAATTCAATATGGGGAAGTAAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATATTGAGGGGATATATGAAACTAAGGTGCCACTGGAGTTTAATGCTATAATCCAGCTTGGTTGCGTATGTAAGGTGGACAAAACTGCTAATAAACGTACTCTGCATGAACCATGGAATTTGAGTGAATTGCACATGAAGACTACGACAGAATGTGTTTATCTTGAACAGTCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATTACCGACTTTTCTTGAAAGACAATTTCATGATGCTTGCCAGGCTTTGTCTATTGAGCCACCTCCGAGGAATGACATTAATTTTAAGGTGGACTATGTCGCACATGTCAAGGATGCTGAAACATTGATGCAAAGAGCAATAAATAGTCACAGTCACGGAAGGGAAAATCACGTGCCTATGGTTGCTGTCACTGAATGCCCTAATGTTCAATTGGTAAAATTGGGCATCCGTGCTCTTGATGATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGTTAAATGAAAGAATTGCTCTCTCAAGATATGCCCATGTACCCCTGGGGAACTTTGAACTTGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGAGCATTGCGTGATAATCAACAGGTTCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGGATTAATGGCGAACAGAACTTTTTTGTTGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACCGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAATACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGTTCATGAACATGATTCTGGAGCATTTTCTATGAATGATCAGAATGGTTTTGATGAGTCTACCTCTTGTGCACATGCCTTTCGAGTCCTTAAGCAGTTGATCCAGCGGTGCCTAGCAGATGCAGTGACATCAGGAAATGTTTATGCTGATTCAATTTTGCAGCATCTGTACAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTGCTGTTGGCAGAGTTTCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATTTGTCTAGAGCTAAAGCTTACTGTGACAGTTTGCTAAGAACTATACAATCTAGAGATTTATTTGAATGGATTGAGCTTGAACCACTACAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGTAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATTATATCAAGCTGGAACATTGCTGAATACTTGCCAAAAAAAGTCCAAGACCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTTCAGGATGGTGACACCTGTACTCCATCAATAAGCATTGGAGCTGCAGCTGCTTTTGAATCAGAAATAACAGAGTATATCAAAGAACAGATTAGCTCTTACTTTGCGGACAAACTGCTGGGAATTGTTCACGATATTAGTCGTCATATGAAGGGGGTGAGCAAATCAGAAAACAACCAGAGTATATCACCAGGCCCTGAATTACATAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCTCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTGTTGAGAAAGAATTTGCTAAAATATGTTGGTGTTAGAGAGTTTGCTCCCGAAGCCGAGTTTCATGATCCTTGTCATTCATTCGTCTTATCCAACGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGACCTGTGCCGGGATTCGGCTTTATTAACTGAGGAGTGGCGTTGTGCTGTGCCACAGTGTGGGCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGACTGTGAGACAAAGAGAACGACTATACCACCTGCAAGATGTGGTGTGTATCAAGTGCCATCAGGTGAAAGCTGCACATTTGGCAGAACAATGCGCATGTGCAGGCTCGTTTAGTTGCAAGGAAGATGCAAATGAATTTCGCAGAAAGATGCAGGTTTTCTTTAACATAGCATCTCGTCAAAAATTCCAGCTTCTCCTAGAGTGTACCTCTTGGATTTTAGAACTTAGATAG 6678 0.4028 MSGDGRRRDRRDNRASKKRKLNRNPEDELEAKLGFDLFSEGEKRLGWLLTLASSSVQDENSYKEYSCVDLYFVTQDGSSFKSKFRFRPYFYVATKVGENIHDKMEMDVEAYLRRRYEGRIADIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKAKSDTAEAFVSMSTERREHRPQDFLDCLTDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHLGFKMSDELGFKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVHPEDMVRFAKEKPQMMASYSVSDAVATYYLYKTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDTEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAFQQLINNLDRDLQYAITVEGKMDLESVSNYDEVRNAIMEKLVNLRDVPTREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFIAKKSDYYALKTQIESEFVDDSENNKSLPRYSEKRSSKSFLDLPKSEQKSRLKDRLKKYCQKAYKRVLDKPVTEIREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSSLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAEVMKFYVRKWCKVSLEVAIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVSNPVPRVAHPDWLHKKVREKEDKFRQRKIVDAFKSMNKNKHSEKHNDSNCVSLVMDDEILNELEDFGNKGRSSTYGPRPIIRHYEANNEQNSRKLSDQQDLEQEHSKHNSSKKNLPSPLQQDEAYEKVDRNVDYQGWLQVKKRMWKNILERRKKQRLEKSKISNRMNGVSEQMNGKRNLGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPVSVPRVFYLNSRSPITEEFMGKRVNKNLPHGRLNYNLYEVSISEIQYGEVSKKLATLLADPDIEGIYETKVPLEFNAIIQLGCVCKVDKTANKRTLHEPWNLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLLPTFLERQFHDACQALSIEPPPRNDINFKVDYVAHVKDAETLMQRAINSHSHGRENHVPMVAVTECPNVQLVKLGIRALDDFPCLSVPYNARDSQYQILGWQQTAGKVGMQRCAASVQWLNERIALSRYAHVPLGNFELDWLIFMADIFFSRALRDNQQVLWISDDGLPDLGGINGEQNFFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFVHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPVKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVFIVSQFMYIPWNYAQNQAQIRASFQDGDTCTPSISIGAAAAFESEITEYIKEQISSYFADKLLGIVHDISRHMKGVSKSENNQSISPGPELHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVGVREFAPEAEFHDPCHSFVLSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYHLQDVVCIKCHQVKAAHLAEQCACAGSFSCKEDANEFRRKMQVFFNIASRQKFQLLLECTSWILELR* 2226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0831 2225 CDD POLBc_epsilon 509 1138 - -
Vra2g0831 2225 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g0831 2225 Pfam DNA polymerase family B 769 1089 IPR006134 GO:0000166|GO:0003677
Vra2g0831 2225 SUPERFAMILY DNA/RNA polymerases 475 1164 IPR043502 -
Vra2g0831 2225 SMART DUF1744_2 1530 1916 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vra2g0831 2225 Gene3D - 957 1141 IPR042087 -
Vra2g0831 2225 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 32 2222 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vra2g0831 2225 SMART polmehr3 245 858 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra2g0831 2225 MobiDBLite consensus disorder prediction 1226 1250 - -
Vra2g0831 2225 CDD DNA_polB_epsilon_exo 246 450 - -
Vra2g0831 2225 Gene3D DNA Polymerase, chain B, domain 1 50 234 - -
Vra2g0831 2225 Gene3D - 244 474 IPR036397 GO:0003676
Vra2g0831 2225 MobiDBLite consensus disorder prediction 1225 1259 - -
Vra2g0831 2225 Pfam DNA polymerase family B, exonuclease domain 74 406 IPR006133 -
Vra2g0831 2225 Pfam Domain of unknown function (DUF1744) 1548 1916 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vra2g0831 2225 Gene3D Palm domain of DNA polymerase 768 953 IPR023211 -
Vra2g0831 2225 SUPERFAMILY Ribonuclease H-like 63 496 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0831 5 2222 Core DNA Replication Machinery Family AT2G27120 66.381 0.0 2995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0831 K02324 - gmx:100812003 4062.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0831 2 7608359 7637207 Vra2g0831 2 7608359 7637207 ECH