Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0827 ATGGCGTCAGAGAGCACAGTGACTTCAAACTCTACCGATGATGAAAGACCGAAGGTGGTTGTCATAATGGGACCCACAGCTTCCGGGAAGTCGAAGCTTGCCGTTGATTTAGCCTCTCACTTCCCCATCGAAGTCATCAACGCTGATTCCATGCAGGTCTACCGCGGCCTTGATGTTCTCGCCAACAAACTCCCTCTCTCTCACCAAAACGGAGTGCCGCATCATCTCTTGGGCACTGTAAGCCCCAACGAGGAATTCACGGCTAAAGCGTTTCGGGATTCTGCAATTCCCGCTCTTGTGAGTCCGTTTCTTCTAGATGATTCTGCCGAAGATATGGATGAAAGCTGTTTGGGTGACCCACCTGGCATCACGCAGTCTGAGAACAGTTTCCCTACTGAAAATGATGGTTCAAGCTATGGTTATGATCTGCTCAAAGATATTGATCCAGTTGCTGCTAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAATTTGTACACTCGCACCGGTGTTCTTCCTAGTAAAGTTTTTCAAGGAAAGGCAGCAGAGAATTGGGGTCAAGTTGACAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGGACGATGGATTACTCAATGAAGTCTATGACATTTATAACTTGAATGCAGATTATACTAGAGGTTTGCGGCAGGCCATCGGTGTCCGTGAATTCGAGCCTCTTCTTAGAACTTGTGTTGTCATAGACATGTATGAAAGAGAGAGAGAACTGACTGAAGGATCCAGGGTAGAAAAGGGCAAGACCTTGTTTAATGGTAATTTGATGGAAATGGTGAGATCTTCCAATGATACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAACATTGTTTGGTTGGAACATATACTACGTTGATTCCACAGAAGCAATATCAAGCAAATCAGAAAATGCATGGGCACGCCAAGTAGTTGAACCTGCTGTGAAGATAGTTAAATCTTTCTTGAGTGAGAATGGAAGCTTGTCATCCACATTTGGGACATCAAATGACACAGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACGTATGCAAGGCGTGTGGAGATCGCGTTCTTAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGTGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGGCCAATTTCCTGGTTTCGTGGAACAGAAGGTTGAGTATTCTTAG 1353 0.4368 MASESTVTSNSTDDERPKVVVIMGPTASGKSKLAVDLASHFPIEVINADSMQVYRGLDVLANKLPLSHQNGVPHHLLGTVSPNEEFTAKAFRDSAIPALVSPFLLDDSAEDMDESCLGDPPGITQSENSFPTENDGSSYGYDLLKDIDPVAANRIHPNNHRKINQYINLYTRTGVLPSKVFQGKAAENWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMDDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVIDMYERERELTEGSRVEKGKTLFNGNLMEMVRSSNDTESTILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWNIYYVDSTEAISSKSENAWARQVVEPAVKIVKSFLSENGSLSSTFGTSNDTGMKIIQRDLWTQYVCKACGDRVLRGLHEWEQHRQGRGHRKRISSLKSKGQFPGFVEQKVEYS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0827 450 Gene3D - 123 184 - -
Vra2g0827 450 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 375 IPR039657 -
Vra2g0827 450 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 208 337 - -
Vra2g0827 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 235 IPR027417 -
Vra2g0827 450 Gene3D Classic Zinc Finger 396 442 - -
Vra2g0827 450 Pfam IPP transferase 132 326 - -
Vra2g0827 450 Pfam IPP transferase 52 98 - -
Vra2g0827 450 Gene3D - 15 102 IPR027417 -
Vra2g0827 450 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 375 - -
Vra2g0827 450 Hamap tRNA dimethylallyltransferase [miaA]. 19 349 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0827 Vra-Chr2 7591762 7596062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0827 22 448 C2H2 Transcription Factor Family AT2G27760 53.642 4.16e-159 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0827 K00791 - gmx:100792690 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0827 2 7591762 7596062 Vra2g0827 2 7591762 7596062 ECH