Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0826 ATGAGACAAGACCTTGAAGGAGATGTGAATGTTATTGATGGTGGCCAAGTCCTTGAAGGAGATTATGTTGAATGGAGGATGCAGATGATGTTGGCTTCATTATTGAGAAGGGGTTTTAGGGTTCTGAAAGAAAAAGGGTTAATGGAAGAAGAAAAGGGTCCAAGTTCTAGTGCTACCAACAAGGAATCTCCTTGTTCCATTTCACAGTCTCCATCAAACCCTAATCCATCCCACAAAAGAAAAGCAGGCAGAAAAAAGTTTAGGGAGACAAGACACCCTGTGTACAGGGGTGTACGCCAAAGAAACGGAAACAGATGGGTGTGTGAAATTAGGGAACCAGTGAAAAAGTCAAGGATCTGGGTAGGCACATATTCTTCTCCTGAAATGGCTGCTAGGGCACACGACGTCGCTGTTTTAGCCCTTAATGGCATCTCTGCTAAGTTCAATTTCCCCGATTCAGTTTCCCTTCTTCCCCTTGCAAAGTCTTCTTCTGCTGCAGATATAAGGGAAGCAGCAAAAGCTGCTACTGTCCATGATACTTTCACGCCAAACTCCTCTTTTTCTTGTTCCTCTCACGGAAATTCTAGTTTTGAAGACAGTTTATTTAACACGAGCATGCACGATGATGAGTCTGAAACCGTGTTCTTTGATGAGGAGGCACTGTATAATATGCCAGGTTTGTTGGATAGTATGGCCGAGGGTTTGCTGATTACTCCACCCTCTACAGCACTGGACTGGGACCCTTCTGATTCTGAAATAGACCTTACTCTCTGGAATAACTGA 783 0.4393 MRQDLEGDVNVIDGGQVLEGDYVEWRMQMMLASLLRRGFRVLKEKGLMEEEKGPSSSATNKESPCSISQSPSNPNPSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEIREPVKKSRIWVGTYSSPEMAARAHDVAVLALNGISAKFNFPDSVSLLPLAKSSSAADIREAAKAATVHDTFTPNSSFSCSSHGNSSFEDSLFNTSMHDDESETVFFDEEALYNMPGLLDSMAEGLLITPPSTALDWDPSDSEIDLTLWNN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0826 260 MobiDBLite consensus disorder prediction 53 77 - -
Vra2g0826 260 MobiDBLite consensus disorder prediction 48 92 - -
Vra2g0826 260 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Vra2g0826 260 Gene3D AP2/ERF domain 94 152 IPR036955 GO:0003700|GO:0006355
Vra2g0826 260 SUPERFAMILY DNA-binding domain 94 153 IPR016177 GO:0003677
Vra2g0826 260 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Vra2g0826 260 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Vra2g0826 260 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Vra2g0826 260 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 55 259 - -
Vra2g0826 260 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 55 259 IPR045277 GO:0003700
Vra2g0826 260 MobiDBLite consensus disorder prediction 78 92 - -
Vra2g0826 260 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Vra2g0826 260 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0826 Vra-Chr2 7563673 7570834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0826 58 259 AP2-EREBP Transcription Factor Family AT4G25470 43.689 6.49e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra2g0826 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0826 - - gmx:100793751 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0826 2 7563673 7570834 Vra2g0826 2 7563673 7570834 ECH
Vra4g0405 4 6977569 6978207 Vra2g0826 2 7563673 7570834 PCT