Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0813 ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAAATGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTACATACACATTTCTCAGGTTGCCCTTGGAGAGACGAAAAAGGAAAAGGCAAATGAACCTGTGGTTGTGTATTTGAAAGTTGGTGACCAGAAGATTGTTTTGGGAACCCTTAAAAGGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTTTCGCACTCTTCGAAAAGTGCCAGTGTATTTTTTTGTGGATACAAAGTTCTGACAGACGATGGTGACATTTCTGACTTTTCTGGGAAGCCTGTAACAAAAGCTGAAGGAGCAAAGGTTACCAAGCCCTCTAAACCAGCTTCCGTGAAAGGTGAATCTGTAAAACAAATAAAGACGGTTGATCCGAAGAAAGAGGATGATTCTGATTCCGACGAATCTGATGATGAGCTTGCTGGTAATGATGAATCTGATTCTGACGAGACGGATGATGACAACGAGACTGATGAGGAGAGTGAAAGTGAGGAAGAGACCCCTGAGAAGAAGGGAAAGAAGAGACAAAATGAGTCTGCCTCAAAAACTCCAATCTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAGAAGACTGATGTTAAAAAGAGTGTACATGTAGCAACTCCCTATCCTATGAAGAAAGGTGGAAAGACTCCCAAAAACGCCACAAAAGGGCAATCTCCCACGTCTGCTGGACAACTATCTTGCGGATCTTGTAAAAAGAATTTTGCCAACGAAGATGGGTTGCAACAACATAAGAAGGCCAAGCATGGTGGTCAGTGA 846 0.4362 MDSPMEFWGVEVKVGQNVKVDPMDPVSAYIHISQVALGETKKEKANEPVVVYLKVGDQKIVLGTLKRDDIPHLSLDLVLDSDSELSHSSKSASVFFCGYKVLTDDGDISDFSGKPVTKAEGAKVTKPSKPASVKGESVKQIKTVDPKKEDDSDSDESDDELAGNDESDSDETDDDNETDEESESEEETPEKKGKKRQNESASKTPISSKKAKTATPEKTDVKKSVHVATPYPMKKGGKTPKNATKGQSPTSAGQLSCGSCKKNFANEDGLQQHKKAKHGGQ* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0813 281 MobiDBLite consensus disorder prediction 151 186 - -
Vra2g0813 281 Gene3D Nucleoplasmin core domain 2 107 - -
Vra2g0813 281 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 5 277 - -
Vra2g0813 281 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Vra2g0813 281 ProSitePatterns Zinc finger C2H2 type domain signature. 257 278 IPR013087 -
Vra2g0813 281 MobiDBLite consensus disorder prediction 241 261 - -
Vra2g0813 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 281 IPR013087 -
Vra2g0813 281 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 5 277 - -
Vra2g0813 281 MobiDBLite consensus disorder prediction 108 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0813 Vra-Chr2 7369168 7371856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0813 5 278 C2H2 Transcription Factor Family AT5G03740 38.926 8.88e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0813 NPL 7.2e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0813 - - gmx:547649 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0391 4 6802273 6805427 Vra2g0813 2 7369168 7371856 PCT