Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g0813 | ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAAATGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTACATACACATTTCTCAGGTTGCCCTTGGAGAGACGAAAAAGGAAAAGGCAAATGAACCTGTGGTTGTGTATTTGAAAGTTGGTGACCAGAAGATTGTTTTGGGAACCCTTAAAAGGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTTTCGCACTCTTCGAAAAGTGCCAGTGTATTTTTTTGTGGATACAAAGTTCTGACAGACGATGGTGACATTTCTGACTTTTCTGGGAAGCCTGTAACAAAAGCTGAAGGAGCAAAGGTTACCAAGCCCTCTAAACCAGCTTCCGTGAAAGGTGAATCTGTAAAACAAATAAAGACGGTTGATCCGAAGAAAGAGGATGATTCTGATTCCGACGAATCTGATGATGAGCTTGCTGGTAATGATGAATCTGATTCTGACGAGACGGATGATGACAACGAGACTGATGAGGAGAGTGAAAGTGAGGAAGAGACCCCTGAGAAGAAGGGAAAGAAGAGACAAAATGAGTCTGCCTCAAAAACTCCAATCTCTTCCAAGAAAGCTAAAACTGCTACTCCTGAGAAGACTGATGTTAAAAAGAGTGTACATGTAGCAACTCCCTATCCTATGAAGAAAGGTGGAAAGACTCCCAAAAACGCCACAAAAGGGCAATCTCCCACGTCTGCTGGACAACTATCTTGCGGATCTTGTAAAAAGAATTTTGCCAACGAAGATGGGTTGCAACAACATAAGAAGGCCAAGCATGGTGGTCAGTGA | 846 | 0.4362 | MDSPMEFWGVEVKVGQNVKVDPMDPVSAYIHISQVALGETKKEKANEPVVVYLKVGDQKIVLGTLKRDDIPHLSLDLVLDSDSELSHSSKSASVFFCGYKVLTDDGDISDFSGKPVTKAEGAKVTKPSKPASVKGESVKQIKTVDPKKEDDSDSDESDDELAGNDESDSDETDDDNETDEESESEEETPEKKGKKRQNESASKTPISSKKAKTATPEKTDVKKSVHVATPYPMKKGGKTPKNATKGQSPTSAGQLSCGSCKKNFANEDGLQQHKKAKHGGQ* | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g0813 | 281 | MobiDBLite | consensus disorder prediction | 151 | 186 | - | - | |
Vra2g0813 | 281 | Gene3D | Nucleoplasmin core domain | 2 | 107 | - | - | |
Vra2g0813 | 281 | PANTHER | 32 KDA HEAT SHOCK PROTEIN-RELATED | 5 | 277 | - | - | |
Vra2g0813 | 281 | Pfam | Nucleoplasmin-like domain | 7 | 100 | IPR041232 | - | |
Vra2g0813 | 281 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 257 | 278 | IPR013087 | - | |
Vra2g0813 | 281 | MobiDBLite | consensus disorder prediction | 241 | 261 | - | - | |
Vra2g0813 | 281 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 255 | 281 | IPR013087 | - | |
Vra2g0813 | 281 | PANTHER | HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 | 5 | 277 | - | - | |
Vra2g0813 | 281 | MobiDBLite | consensus disorder prediction | 108 | 281 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g0813 | Vra-Chr2 | 7369168 | 7371856 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g0813 | 5 | 278 | C2H2 Transcription Factor Family | AT5G03740 | 38.926 | 8.88e-47 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra2g0813 | NPL | 7.2e-13 | CL0055 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g0813 | - | - | gmx:547649 | 333.954 |