Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0808 ATGGAACAACCTCTTTCAGACACTGATCAGTTTTTGACTCTGGGCGCCACATCGGACGAGTCACAGAGTCCTAAGGAACCAGCGTCGCATGTCAGCGCCGCCGACAATAACAACAATGCTGTTAGCGCAGTTAACGTTGCAACTGGTTCTGGTTCTGATACGGAGCTGGTTGTGGCCTTAGCAAACTCCGATGCTGTAGGTTCGGGATTGGTGGAGAAGCGAAGAAGGGGGAGGCCTCGGAAGAGCGAGGCTGTCGGGATCACGGCGTCTCCTTTGATGGCGGTGGTGCCGCCGCCGCCGTCAGGATTTTCCGATCAGACCAAGAGAGGAAGGGGACGCCCTCGTGGCTCTGGGAAACTGCAAGTTATAGCTTCCATCGGTGGGTTTATGGCAGAAACAGCAGGGCGAAGCTTCATACCTCATGTTCTGACTGTGCAAATTGGAGAGAATTTGGTTGAAACGATAATGTCATTTTTTGAGAAAGGCCCGCTGTCGGTTTGCATACTTTCTGCTACTGGTGCTATTTCGAATGTGACCATTCGTGAACATGCTGGTTCCAATCATATTACGAGATTTGAGGGTACCTTTGAGATACTGTCATTATCAGGAGCTTGTACCTTCGTTGGTGGTATTAATGGTCCAGTTCGTACAAGTGGATATTTGAGCATTTCAATGGCTAAATCTGATGGAAATGTTTTGGGGGGAATTCTTGAGAGTGCATTGGTAGCAGCTTGCCCTATTCAGCTTATTATGGCCACTTTCAAGCAAAACATGAGCAGTCAATTGAAGAGGAAACAATTGTTAGAATTTTCTAATGGCCCCCTTATACTGGAAAGTCCAAATTCAGAAATTGGTAAAATGAAAGTTCCAAAGTTGACAGAAGGAGAGAAAAGTTGTTCTTCACCAGCAACAGAACTTGTTCCAACAACAGTACCTAATTGTGTAGCAGATAATGTGTTTTCTGCTACACCAAATGGAGTAGCAGATAGTGCTACTAATGTGCACTCTGCATGTGTTATTGGTGTTGATATGGACAACCAGGCACCGCAGTCTGCATCAGATGATTCAGATCAGAAGACTTCTGCAGAATTGAATGCAAATGTTATAGAGTTCTGA 1116 0.4588 MEQPLSDTDQFLTLGATSDESQSPKEPASHVSAADNNNNAVSAVNVATGSGSDTELVVALANSDAVGSGLVEKRRRGRPRKSEAVGITASPLMAVVPPPPSGFSDQTKRGRGRPRGSGKLQVIASIGGFMAETAGRSFIPHVLTVQIGENLVETIMSFFEKGPLSVCILSATGAISNVTIREHAGSNHITRFEGTFEILSLSGACTFVGGINGPVRTSGYLSISMAKSDGNVLGGILESALVAACPIQLIMATFKQNMSSQLKRKQLLEFSNGPLILESPNSEIGKMKVPKLTEGEKSCSSPATELVPTTVPNCVADNVFSATPNGVADSATNVHSACVIGVDMDNQAPQSASDDSDQKTSAELNANVIEF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0808 371 MobiDBLite consensus disorder prediction 95 118 - -
Vra2g0808 371 Gene3D - 140 271 - -
Vra2g0808 371 MobiDBLite consensus disorder prediction 1 37 - -
Vra2g0808 371 PANTHER DUF296 DOMAIN PROTEIN 41 354 - -
Vra2g0808 371 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 255 IPR005175 -
Vra2g0808 371 ProSiteProfiles PPC domain profile profile. 135 275 IPR005175 -
Vra2g0808 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 354 IPR039605 GO:0003680
Vra2g0808 371 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 260 - -
Vra2g0808 371 CDD DUF296 140 254 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0808 Vra-Chr2 7294235 7298123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0808 73 254 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 39.894 9.10e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0808 - - gsj:114378162 398.667