Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0807 ATGGAGGCGCCCGTAGCGAGACCGAGGGGGCGTCCGAGGAAGAGGAGAAGAAATGACGAAGAGAATGAGAACGAAGCAAAGAAACTGGCGTCCATGGGAACACGACCTCCTGTGGCTTTGTTAGGAAGGTTCGTTTTGAAAAATTTTCCCAGGAATGGAGTATTCCTGGGAAAAGTAGTGTACTATGAAAGCGGTCTTTATAGAGTTTGTTACGAGGATGGCGATTCAGAGGACCTTGACAGCGGTGAGGTCCGCTCTATACTAGTAAAAGAGGGTGAAATTAATGGTGATTTGGCGGGGAGAAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATGGTGGAAAGACCGGAATTGGTTCACAGAAAGGACCAGTTGAATCCATTAAGGAGGAATCTAGGGCTGGAGTTTGTGAATTGAACGATGGTGGATTGATGATTGAAAAAAATGAGGAAGAAGATGATGAGGATGTCAATTCTTTGAGTGATTCTGGCACTGGCCAGGGAATGGATTCTGGTGCTGAGGCTGAGACCCTGCCACCACCACCTGAGTTGCCGGTGTCATCAGGTACCATTGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGATCCTTTAGTATACGGTTGTTCCTACAGCCTTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACGAATTCACTATTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGGCAGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCATCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTCCTTATACAATATTTGGTAGTCAGTGGACGCACGTATTCTCATGAGTGGAAAGCATTTTACCAAGAGGTGTCCACTGTAGAATATTATTTACTGCCGGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACATTCGGAGAGAATCAGAGGTTGGGATTGATGATGATGATGGAGAAGATATCCTTCCTACAGAAGTTGGGCTTAGAAGGGTCGAGCCAAGATACACCTTTACTTCAGCGTCTGAGGATAAAGAAGCTACAAAGCTTGTTTCAGCTTCAAATGCTCTAAACCAACCTGGAAGCTTTATTTCATATTCCAGAGGTACAGAAAGCACTGAAGATGGTGATGTAGATAGAAATGGAGATGAATGCCGCCTCTGTGGCATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTAAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTTGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGTGAACATCTACTTGTGCTGAATATTGGCAATGCCGAATCCTGTCTTAGGTACTACAATCAGAATGACATCCCCAAGGTTCTCCAAGTGCTTTATGCATCCTTGCAGTACAGACCAATATACCATGATATTTGCATGGCAGTGCTTCAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATATAAAGGAAGAGACTAAGCCTTCCCCTTTTTTACTTCCTCCTGTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCATTAACCTCTGCTAGTACAGCTTACTGTGACAATTTGGTGCCATCTCTTGATGCTTCATCAGTTTCCACCCCAAGTTCTGCTCTTCAGTGTAATGGCAATGGTAGCAGTAGTGAGTACCCTGTTGTGACTACAAAGCTTCCTGAGAGCAGTAGGATCGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTCATCATTCCAACATCAAGCATGGAAATTTTGATGGTAGGCCAACAGAGGTAGATCCTGGCAAGTGTTCTTCAGTACATGGTCAATTTAGTTATTATGCACATGCAAACCATACAGGGTTTCCCATAAATATTTCTTTCCAAACCAAAGAAAGCACTCAAGCCAGTTTTGAAAACTGTGAACGCAATGTAACCAATGGTTTTGCCTACATGGGTTTCTCCTATAAGCCTTTGTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCGGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTAGCAGCCTCACGATTTTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCATTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTACAAAAGTGCTTGCTGGTTTTTCTCCTATAAAAAGTGCGGAGGGAGTACTCCCTAGTATTGCAACCTACATTATATACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAATCTACAGAAGGCAATGGCGTAAGCGAGTGGAACAGGCCTCAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTCGGTCAATTTCTTTCTTTGGGGAATGGGTTAAGCTGATGGATGACTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATCCACTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTACTGACGAAGCTACAACTGAGGGTCGCCCTGAAAATTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCTATCTTGCCAAAATCCATGGTTAGAAAAGCAGCACGAGAAGGTGGTTCAAGAAAAATTCCTGCCATTTTTTATGCTGATGGAATTGAAATTCCCAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTACAAATGAGTAGGAATGCATCACAGCTAGCACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGGCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACACTAAACTGGTAGAGGGGAAAAATTGTTATGGGATAGTTTTTGGGAGTCAGAAACATCTTCCTTCTCGGGTGATGAAAAATGTTATTGAAATAGAGCAAGATCCAAAAGGAAAGGAGAAGTATTGGTTTTCTGAAGCACGAATTCCTTTATATTTGGTGAAAGAGTATGAAGAAGGTAAGGGAAACATGCCATATAATGAAGGGCAGCACTTGAATACTGCATCTGGGTTGCACAGAAAGCGGCTAAAAACTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGAGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTACCAAGTGTAATGCATGCCAAGGTTATTGTCACGAGGGTTGTTCCACAAGTCAAATAGTTTCTGCAAACGAAGTTGAGTACTTGACCACGTGCAACCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAAAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGAACAGTTTTGAAGAGATCACGGCCTAGAACTCTTGATCAAGCACCGAAATCTTCCAAGACAAAGGCTAATAATCCCATGAAACAAGTTACTTCTGTGACGAGTTTGAAAAGAACAAAGGCTAAACGTTCTGAACAAGAACCAACTACTGGGATAAATGATAATCATCTTGACATCCAACAAGTTGCTTCTGTGGAAACTTCAGCTGCAAAACGCCATCGCAAAAATTGTTCTTGGGGCATTATATGGAAAAAGAAACATAATGAAGATTCAGACGATTTCATGCTCAGAAACATACTTTTAAAAGGGAGCTCGAACATACCAGGACTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATACGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTAAGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATTTGAAGCCTAAGAAACAAGAGGGCAAAAGGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAAGTTGCTACTCCCGTCTTTCCTGTATATGATGATACTTCTACCTTTTCTGCGGAGGATCCTAGTCATGTCTTTCCTGATGAGGATCCTACTACCGTCTTTCCTGTTGAGGATGATCGTCTTCTTTTCTCCCTCACAAGTGTTGAACTGGTAACAGAACCCAAGATAGAAGGAGATATGGAGTGGAATGGTGTCTCTGCGCCAGGGCTTCAGAAACTGCCAGTGAGAAGGAATGTTAAGAACGAGGGTGATGATGTTTCTTTTGAAGGTGGTGTACCTTTGGATGCTGAATTCTCTACATACGATGGTGAGACGGGTAATCTGTCCAATCCTGCGGAGGAATCTATACCTTTAGAATACACCTCTGCTGTTGACTTAGACAACAAGCTGCCGAATGACTCTGAAAATGAAAATTACGATGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGTTGCAGTCAGATGATGGTGGTCAGTTCGAGGGTGTTGACATGTCTGAGGACTTGTCAGGATATATGGAAAATTCTAGCACCACCACCCTTATTCCTGAATCGTGCGATGATGCTAGTTTGGCAGATAAATCAGCACCTACGACTTACACCGGCCATCGTTGTATGCAATGTTCACAAATGGAACCAGCCCCTGATCTCCGTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCACCTTGGGTTGAATTACCATCGCTTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATATGGTAATAACTGA 5199 0.4276 MEAPVARPRGRPRKRRRNDEENENEAKKLASMGTRPPVALLGRFVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRSILVKEGEINGDLAGRKEKLEELVSKNGGKTGIGSQKGPVESIKEESRAGVCELNDGGLMIEKNEEEDDEDVNSLSDSGTGQGMDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRQHLEFLSSEGSERASRCLRCNEWSLLDPVTWPVFLIQYLVVSGRTYSHEWKAFYQEVSTVEYYLLPVSRKLMILQILCDDVLESEDILNEMNIRRESEVGIDDDDGEDILPTEVGLRRVEPRYTFTSASEDKEATKLVSASNALNQPGSFISYSRGTESTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMLGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGNAESCLRYYNQNDIPKVLQVLYASLQYRPIYHDICMAVLQYWSVPESLLFHSVSSGANVNSANIKEETKPSPFLLPPVGEGNLMKEEYPLTSASTAYCDNLVPSLDASSVSTPSSALQCNGNGSSSEYPVVTTKLPESSRIESILSADSASVSVSHHSNIKHGNFDGRPTEVDPGKCSSVHGQFSYYAHANHTGFPINISFQTKESTQASFENCERNVTNGFAYMGFSYKPLSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSATKVLAGFSPIKSAEGVLPSIATYIIYMEECLRGLVVGPFLSSIYRRQWRKRVEQASTFSAIKPLLLELEENIRSISFFGEWVKLMDDWLVEFSMVQSATSTLGTAQKRAPSGRRYKKRSATDEATTEGRPENFVWWRGGKFTKFIFQKAILPKSMVRKAAREGGSRKIPAIFYADGIEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKNCYGIVFGSQKHLPSRVMKNVIEIEQDPKGKEKYWFSEARIPLYLVKEYEEGKGNMPYNEGQHLNTASGLHRKRLKTICKDIFFYLTCKRDNLDVESCSVCQMGVLIRDATKCNACQGYCHEGCSTSQIVSANEVEYLTTCNQCYHARLLAQKENSNESPTSPLLLRGRENNSGTVLKRSRPRTLDQAPKSSKTKANNPMKQVTSVTSLKRTKAKRSEQEPTTGINDNHLDIQQVASVETSAAKRHRKNCSWGIIWKKKHNEDSDDFMLRNILLKGSSNIPGLKPVCHLCRKPYTSDLMYICCETCQNWYHAEAVELEESKLSSVLSFKCCKCRRIKSPVCPYSDLKPKKQEGKRSRTKAKKEHSGADTDSGAISDMRECEVATPVFPVYDDTSTFSAEDPSHVFPDEDPTTVFPVEDDRLLFSLTSVELVTEPKIEGDMEWNGVSAPGLQKLPVRRNVKNEGDDVSFEGGVPLDAEFSTYDGETGNLSNPAEESIPLEYTSAVDLDNKLPNDSENENYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSEDLSGYMENSSTTTLIPESCDDASLADKSAPTTYTGHRCMQCSQMEPAPDLRCEICGILIHSQCSPWVELPSLGSWRCGHCREYGNN* 1733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0807 1732 MobiDBLite consensus disorder prediction 1441 1468 - -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 1441 1463 - -
Vra2g0807 1732 CDD PHD2_CHD_II 422 463 - -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 946 967 - -
Vra2g0807 1732 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1198 1228 IPR017896 -
Vra2g0807 1732 SUPERFAMILY FYVE/PHD zinc finger 394 465 IPR011011 -
Vra2g0807 1732 PANTHER PHD FINGER FAMILY PROTEIN 2 1727 - -
Vra2g0807 1732 Pfam PHD-finger 422 464 IPR019787 -
Vra2g0807 1732 ProSitePatterns Zinc finger PHD-type signature. 422 463 IPR019786 -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 1 31 - -
Vra2g0807 1732 ProSiteProfiles Zinc finger PHD-type profile. 419 466 IPR019787 -
Vra2g0807 1732 Pfam DDT domain 196 252 IPR018501 -
Vra2g0807 1732 SMART testlast3 195 255 IPR018501 -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 1249 1323 - -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 1249 1274 - -
Vra2g0807 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1375 1434 IPR013083 -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 1283 1304 - -
Vra2g0807 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 469 IPR013083 -
Vra2g0807 1732 SMART PHD_3 1683 1727 IPR001965 -
Vra2g0807 1732 SMART PHD_3 1380 1428 IPR001965 -
Vra2g0807 1732 SMART PHD_3 421 464 IPR001965 -
Vra2g0807 1732 SMART PHD_3 1191 1239 IPR001965 -
Vra2g0807 1732 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 146 187 - -
Vra2g0807 1732 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 2 1727 - -
Vra2g0807 1732 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 341 IPR028942 -
Vra2g0807 1732 SUPERFAMILY FYVE/PHD zinc finger 1379 1434 IPR011011 -
Vra2g0807 1732 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0807 Vra-Chr2 7259041 7270587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0807 285 555 EF-hand Containing Proteins AT5G22760 48.913 4.09e-72 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vra2g0807 DDT 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0807 - - gmx:100796377 2355.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0385 4 6744481 6752404 Vra2g0807 2 7259041 7270587 PCT