Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0800 ATGGAAAGGAACGAAAATTACAGTTCAGAGGAGGAATGCATGGAGGATTACAGGCGTGGAGGGTACCATGCCGTTCGAATCGGCGATGCTTTCAACAACGGCCGCTACGTCGTGCAGTCCAAGCTCGGTTGGGGCCATTTTTCCACCGTTTGGCTCGCTTGGGACACTCTCATTTCGCGTTTTGTAGCCCTTAAAATTCAAAAGAGTGCGCAACATTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATAGCCGAGGGGGACCTGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTCAAGCATTCGGGGCCTAATGGACAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATTAAATATACTGACTATCGTGGGGTTCCACTCCACATGGTTAAAGAAATCTGTTTTCATATATTGGTGGGCTTAGATTACTTGCATCGTGAGCTTTCTGTTATACACACTGATTTAAAGCCAGAAAATGTGTTGCTTCAGTCACTGATAAATCCATCCAAAGATCCTAGGAAATCAGGTGCTTCACTCATCCTTCCGAATACTAAGGGTAAGGCTGCGTCTAACAATGGGACTCACCAAGACAATAAAATTTTGAATGGAGATCCACTGAAGAGCCAGAAAAAGAAAGTCAAGAGGAAGGCTAAGGTAGCTCAAGGCTTTGTTGGGACGGAAACTTCAGAGGAAGCTGAGGATTATAAAGGACCCGAGCAAGAAGATTGTGGTAATGATGTAAAATCAAGTGTAGAATCTGTTGAAGATAAACCTGATAGTTCTCTGAGTAAAGATGAATCAACAAAGAATTTTGAAAAGGATGCTTCACAAGGAAGTCATAGTCATATGAGTAGCAGCCGTTCCATGAAAAAGAAATTGCTGGCAGCCGTTGACCTTAGGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTTACAAACAATTCACGAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCCAAATACTCAACCCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCAACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGATGAGGACCATCTGGCATTGATGATGGAGCTTGTTGGGAAGATGCCTCCGAAGATTGCACTAGGGGGACGATATTCTCGAGAATTTTTCAATACACATGGTGACTTGAGGCACATAAGCAATTTGAGATTCTGGCCAATTGATAAGGTGCTGATGGACAAGTATAATTTCAGTGAGCAAGACACAAAGGACATGGTTGACTTCCTTGTTCCAATACTTGATTTCGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCGTGGTTGAATACAGGTCCTCGTACTCTTCAGCCCTCAATAACTTCCGTTCAACCTGATGCCGTCAATGAGGAATTGTCTGAAAGAAGGAAAAGGGAAGCTGCTGAAAAAGAGTCAGTGGAAATTGGTTTGAGGAATATAGCCATTAAAGGAACTTCTGAGCCTCTCAAAGACTCCCAACCTCTAAAATCACCCAAATATATATAA 1620 0.4259 MERNENYSSEEECMEDYRRGGYHAVRIGDAFNNGRYVVQSKLGWGHFSTVWLAWDTLISRFVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYTDYRGVPLHMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLQSLINPSKDPRKSGASLILPNTKGKAASNNGTHQDNKILNGDPLKSQKKKVKRKAKVAQGFVGTETSEEAEDYKGPEQEDCGNDVKSSVESVEDKPDSSLSKDESTKNFEKDASQGSHSHMSSSRSMKKKLLAAVDLRCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELVGKMPPKIALGGRYSREFFNTHGDLRHISNLRFWPIDKVLMDKYNFSEQDTKDMVDFLVPILDFVPEKRPTAAQCLSHPWLNTGPRTLQPSITSVQPDAVNEELSERRKREAAEKESVEIGLRNIAIKGTSEPLKDSQPLKSPKYI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0800 539 ProSiteProfiles Protein kinase domain profile. 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0800 539 MobiDBLite consensus disorder prediction 184 300 - -
Vra2g0800 539 MobiDBLite consensus disorder prediction 490 509 - -
Vra2g0800 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Vra2g0800 539 PANTHER SERINE KINASE-LIKE PROTEIN 5 535 - -
Vra2g0800 539 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Vra2g0800 539 SMART serkin_6 36 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0800 539 SUPERFAMILY Protein kinase-like (PK-like) 31 486 IPR011009 -
Vra2g0800 539 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Vra2g0800 539 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 535 - -
Vra2g0800 539 Gene3D Transferase(Phosphotransferase) domain 1 119 475 - -
Vra2g0800 539 MobiDBLite consensus disorder prediction 197 216 - -
Vra2g0800 539 MobiDBLite consensus disorder prediction 494 509 - -
Vra2g0800 539 MobiDBLite consensus disorder prediction 242 289 - -
Vra2g0800 539 CDD STKc_SRPK 25 474 - -
Vra2g0800 539 Pfam Protein kinase domain 311 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0800 539 Pfam Protein kinase domain 36 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0800 Vra-Chr2 7192297 7196273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0800 6 523 EF-hand Containing Proteins AT5G22840 64.368 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vra2g0800 Pkinase 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0800 K08832 - gmx:100790060 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0800 2 7192297 7196273 Vra2g0800 2 7192297 7196273 ECH
Vra4g0377 4 6668906 6673031 Vra2g0800 2 7192297 7196273 PCT