Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0798 ATGTCCCGTCGCGGCTCTAACCAATCGGATTTCAACCGTCCGCAGCAATCTTCGGCTTCTTCTTCCGCTGCCGGAGGCCGAGGCCGCGGTCGCGGCCGCGGGCATTCTGCTCCGTCTCCTCCGGCTCAAACATTTTCCCCTCGTCCTGCACAAACATCATCCGCTGCTTCTCCGGCCCCGTCTACCGCCGCTCCTCCCCGTGCCGTGGCGCCTGTCCCTGCATCAGCAGGACCGGGTTCATCCCGCCCTCCGCCAGTCCAAGCCTCGCCGGCGCCAGTTCCTGGATTGGGAGCGGTTGCTACAACGGCTCCGCCGGCAGTTCAAACAGTTACTTCTGCGCTCGAGAAGCAACTTACATTGGAGACGTCAGCACCGTCATCGTCGAAGGCTATGAGATTCCCAGACCGGCCAGGATTTGGGAGAGCGGGAAGGAAGATCCAAATTAGAGCAAATCATTTTCAAGTGAAAGTTGCGGTGCCCGAAATATATCACTACGATGTGGCAATCACTCCGGAGATTACTTCGAAGAAGGTTTCCAGAGATGTTATCGACTTGTTGGTTCGAGCACACTGTGAATCGATTCTGGGAAATCGCATGCCCGCATACGATGGACGAAAAAGTCTTTTCACCGCCGGACCTCTCCCTTTTGAAATTAAGGAATTTAAGGTCAAACTGGGAGATAACGATGAACTAAGGAAAAAGCGTGAACGTGAGTTTAGGGTCACAATCCGATTTGCTTCGAAGACTGACCTTAATCACCTTACTCAATTTCTCGCTCGCCGTCAGTTGGACTGCCCACAGGAAACTATTCAGGCCCTTGATGTTGTTCTGCGGGCTACACCTTCTGAGATGTTTGATGTGGTTGGGAGATCCTTTTTTTCTCCTGCATTGGGTCCGAAAGGACCGTTGGGTAGTGGAACCGAATATTGGCGGGGGTATTACCAGAGTCTTCGCCCAACTCAGATGGGCCTGTCCCTTAATATTGATGTCTCAGCTAGGGCATTTTATGAGGCCATTCCTGTCCTTGACTTCGTTTCGAAGAATTTTAGACTCGATCTACGCAGGCCTTTGCCTGATCAGGACCGAATTAAGATTAAGAAAACTTTGAGAGGAATCAAGGTCCAAGTTAATCATGGACAGAATATTAGACGTTACAAAGTCACTGCAGTAACAAAAGAGCCGCTCAGAGCCTTAATGTTTACTGATGAAAATGGAACCAACAAATCTGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCATTGCAGTATACACAGCTTTCTGCTCTTCAAGCTGGTAGTGACACTAAGCCAATATTTTTGCCTATGGAGCTTTGTCAAATTGTTGCTGGACAGAGATACACCAAGAGATTAAATGAAGATCAAGTGACTGCTCTTTTAAAGGCCACATGTCAGCGCCCTCGTGAGAGGGAAGACTCCATCAGACAGATTGTGAGGCAGAGAAAATTCAGCACGGACAAATTTGCCCGCCATTTTCAAATTCAAGTCAGGGAGGATCCAGTAGTACTTGATGCTCGTGTATTACCTCCTCCTATGCTTAAATACCATGGATCGGGAAGTGAATCACAGATTCAACCAAATATGGGACAGTGGAATATGATTAATAAGAAAATGATTGCTGGTGGTACTGTTGAACACTGGACTTGCCTAAACTTTTCTGGAAGAATACACAGAGATCTGCCATATCAACTTTGTCAGAATTTGGCTGAAATGTGTAACAGCAGGGGAATGCGGTTTAAAGAAAGTCCTGTAGTACCAATCACATCATCTCCAAGTGGTCAAATAGAGAATGCCCTTGGGAACCTGCATAAGCAGTGTAAACGGGCGAATGTAGGGCTCCAATTGTTGATTATAATTTTACCTGACGTCAAGGGGTCATATGGGAAAATAAAGCGCATCTGTGAAACAGAATTAGGAATAGTATCTCAGTGTTGCCAGCCCAAACAAGTGGTAAAAATGAGCAGGCAATATCTTGAAAATCTGGCCCTCAAGATAAATGTGAAGGTGGGTGGTACAAACACGATGTTGAATGATGCATATGTGCATAGAATACCTCATGTCTCCGATGTACCGACGATAATATTTGGTGCAGATGTTACGCATCCCCAGCCAGGGGAGGACAGTAGTCCTTCCATTGCTGCAGTGGTGGCATCCATGGATTGGCCTTTTGTAACAAGGTACAAAGGAGTTGTTTCTGCGCAGAAACATCGCGATGAAATGATACACGATCTTTATATTGGAGATTCGGCAAGGGGAATTCCACCTTCAGGAATTATCAGGGAGTTGTTTCGGGCTTTCCGAAATTCAACTAATCGTAAACCGGAGAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGACAGTTTAATCAAGTGCTTCTTTATGAAATGGACGCCATAAGAAAGGCTTGTAGCTCTTTAGAACCGGGTTATTTACCCCCAGTTACTTTTGTGGTGGTCCAGAAGAGGCACCACACTCGGTTGTTCCCTGCCGATCACGGAGCACGAGCACGTGATAGTACAGATAGAAGTGGAAATATAATGCCAGGTACTGTAGTTGATACAACTATATGTCATCCTCGGGAATTTGACTTTTATCTGAATAGTCATGCTGGAATTCAAGGAACAAGCCGACCAACTCATTACCATGTATTGTTCGATGAGAATAAATTTACTGCTGATGAGTTGCAAATTTTGACCAATAATTTGTGTTACACCTATGCAAGGTGCACAAAATCAGTTTCAATAGTTCCTCCCGCTTATTATGCCCATTTGGCCGCTTTCCGTGCTCGCTATTACATTGAAGGTGACACATCGGATGCTGGTTCTTCAACTGGAGGTAAGGGTATTTCAGCCAGCTTTGAGGTTAAATTGCCTTCGGTGAAGGGTAATGTCGCCGACGTGATGTTTTTCTGTTGA 2940 0.4595 MSRRGSNQSDFNRPQQSSASSSAAGGRGRGRGRGHSAPSPPAQTFSPRPAQTSSAASPAPSTAAPPRAVAPVPASAGPGSSRPPPVQASPAPVPGLGAVATTAPPAVQTVTSALEKQLTLETSAPSSSKAMRFPDRPGFGRAGRKIQIRANHFQVKVAVPEIYHYDVAITPEITSKKVSRDVIDLLVRAHCESILGNRMPAYDGRKSLFTAGPLPFEIKEFKVKLGDNDELRKKREREFRVTIRFASKTDLNHLTQFLARRQLDCPQETIQALDVVLRATPSEMFDVVGRSFFSPALGPKGPLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEAIPVLDFVSKNFRLDLRRPLPDQDRIKIKKTLRGIKVQVNHGQNIRRYKVTAVTKEPLRALMFTDENGTNKSVVQYFQEKYNISLQYTQLSALQAGSDTKPIFLPMELCQIVAGQRYTKRLNEDQVTALLKATCQRPREREDSIRQIVRQRKFSTDKFARHFQIQVREDPVVLDARVLPPPMLKYHGSGSESQIQPNMGQWNMINKKMIAGGTVEHWTCLNFSGRIHRDLPYQLCQNLAEMCNSRGMRFKESPVVPITSSPSGQIENALGNLHKQCKRANVGLQLLIIILPDVKGSYGKIKRICETELGIVSQCCQPKQVVKMSRQYLENLALKINVKVGGTNTMLNDAYVHRIPHVSDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPFVTRYKGVVSAQKHRDEMIHDLYIGDSARGIPPSGIIRELFRAFRNSTNRKPERIIFYRDGVSEGQFNQVLLYEMDAIRKACSSLEPGYLPPVTFVVVQKRHHTRLFPADHGARARDSTDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENKFTADELQILTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYIEGDTSDAGSSTGGKGISASFEVKLPSVKGNVADVMFFC* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0798 979 SMART PAZ_2_a_3 339 466 IPR003100 GO:0005515
Vra2g0798 979 MobiDBLite consensus disorder prediction 1 99 - -
Vra2g0798 979 ProSiteProfiles Piwi domain profile. 622 942 IPR003165 GO:0003676
Vra2g0798 979 Gene3D - 514 685 - -
Vra2g0798 979 MobiDBLite consensus disorder prediction 77 91 - -
Vra2g0798 979 ProSiteProfiles PAZ domain profile. 339 450 IPR003100 GO:0005515
Vra2g0798 979 SMART Piwi_a_2 622 942 IPR003165 GO:0003676
Vra2g0798 979 Pfam Argonaute linker 2 domain 476 522 IPR032472 -
Vra2g0798 979 Pfam Argonaute linker 1 domain 288 337 IPR014811 -
Vra2g0798 979 SUPERFAMILY Ribonuclease H-like 610 942 IPR012337 -
Vra2g0798 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 962 - -
Vra2g0798 979 CDD PAZ_argonaute_like 338 449 - -
Vra2g0798 979 Gene3D - 691 979 IPR036397 GO:0003676
Vra2g0798 979 MobiDBLite consensus disorder prediction 1 24 - -
Vra2g0798 979 SUPERFAMILY PAZ domain 145 487 IPR036085 GO:0005515
Vra2g0798 979 Pfam Piwi domain 623 941 IPR003165 GO:0003676
Vra2g0798 979 CDD Piwi_ago-like 494 941 IPR045246 -
Vra2g0798 979 PANTHER PROTEIN ARGONAUTE 1A 40 962 - -
Vra2g0798 979 Pfam PAZ domain 344 466 IPR003100 GO:0005515
Vra2g0798 979 SMART DUF1785_2 286 338 IPR014811 -
Vra2g0798 979 Pfam N-terminal domain of argonaute 144 277 IPR032474 -
Vra2g0798 979 Gene3D paz domain 333 454 - -
Vra2g0798 979 MobiDBLite consensus disorder prediction 46 60 - -
Vra2g0798 979 Pfam Mid domain of argonaute 533 611 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0798 Vra-Chr2 7170129 7176258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0798 94 979 Eukaryotic Initiation Factors Gene Family AT1G48410 57.050 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0798 K11593 - gmx:100799033 1343.56