Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g0791 | ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGGCCTGGTGATGTACCTCTTGATCAAAGGAGGAATGGGTTGATTGCTGAGCTCTCTCAGGAAGATAGACTGGATATCCAAGAGAGAGGGCAGGGTCATGTTTTAGAAGATGCAGTTTTGGTTGAGAATGAATCTGAAACATGGTCACAGTCACCAAGTCATAATGAGTCCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTTAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAGTGGGTCTCGACGAAGTAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAACAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAATTGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCACTGTTAACCAGAATGGGGGCCAAAATGAGCATACACGGAGGGGCATACGGAAATTATGCGGCCGACAGGCTATCCTTGATATGCTTAAGAAGGCTGAAAGAGAGAGGCAAAGAGAAATTGAGGATTTGTCAGTACATCGGGCTGTATCTCAATTCCCCTATCGTAATCGAATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTCGATAATAACAGGCCCCTATCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAGCAAACTGTATCAGGTCTAAGGGAGGGATTTATCGCTAGAAAGGAGAATTGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATAATATTGATTTTAGCACTAATGAACAAATGGGATCAAACAGTTCACGTTTAGTCCCAATTGCTCATTCTGAGCAGTCTGACCCTAATGACAGAGGAAGCGATGGTCTCAGGGTATCAGACAGCCAGAGCTGTGTACAGGGTACCACATCTGAGAACCTAAATTGCCAAGAATCTAATGCTCAAGTAGGAGATCGAATGCAACATTTTCCGATTGAATCACTAGATTGCCAATCATCATTCAGTGCTAGTGTTGAAAGAGTGAACAACACCGAGCAAAATGTTGATGTGTTGCCTATTGATTACGGTGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCGCAGCATAGTAATAACCAGGAATTCAGCGAGGTGCATATTGAGCATTCTGGGTTGTGTGATATAAATAGTAACGAAAACAATTCTTCAAATCATGACATTCATATGGATGGTAATGTTGACGATGTAAATTGGAATGAATCTAGTACTCTGGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGACTGGTATCAGAATAATATCGAATGGAGAAATAGCGCAGAGGAAAATGCGGATGGTAATCAGATCAGTAACACAGGAAATGAGTGGCCAGAAAACACTTTGGGAAATGCGGATGGAGAAAACTCTCATCTGCAAGAATCTCATGAGGCATGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAATGCTCCAGTTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCGAACCTCCTTCACAGCAGTTTCCGGGATAGTCTGGATCAGTTAATACAATCATATGTTGAAAGGCAAGGTAATGCACACATTGACTGGGAATTGCAAGAAACAACCCCATCATCTGACTCGGTAGAGCAGGACCTTGAACAGCAAAGTAGAGATCAAATTGTTGATCAGGAGGGTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGAGATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACTTAAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCGTCTGAAGTACATGATTATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGGAAGAAATGCCCTATGTGTCAAGCACCTGTGGTGGAGGTGATAAGGGCTTACTCTATACAATAA | 2589 | 0.4326 | MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGDVPLDQRRNGLIAELSQEDRLDIQERGQGHVLEDAVLVENESETWSQSPSHNESHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSSGSRRSSGSRREWLGETEQERVRIIREWVQLSSQQRSVSSGENREEPSAEIGTQIERVRDGLTVNQNGGQNEHTRRGIRKLCGRQAILDMLKKAERERQREIEDLSVHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFIARKENCGCSQATSNVSDTSSNVDNIDFSTNEQMGSNSSRLVPIAHSEQSDPNDRGSDGLRVSDSQSCVQGTTSENLNCQESNAQVGDRMQHFPIESLDCQSSFSASVERVNNTEQNVDVLPIDYGANEITQQSLRIEDSQHSNNQEFSEVHIEHSGLCDINSNENNSSNHDIHMDGNVDDVNWNESSTLEVEQPEEAFENEGSDWYQNNIEWRNSAEENADGNQISNTGNEWPENTLGNADGENSHLQESHEAWQEDGGFQEAVENWLGGPSDHENAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRDSLDQLIQSYVERQGNAHIDWELQETTPSSDSVEQDLEQQSRDQIVDQEGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNEINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSEVHDYCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ* | 863 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g0791 | 862 | ProSiteProfiles | Zinc finger RING-type profile. | 810 | 849 | IPR001841 | - | |
Vra2g0791 | 862 | SUPERFAMILY | RING/U-box | 809 | 855 | - | - | |
Vra2g0791 | 862 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 794 | 860 | IPR013083 | - | |
Vra2g0791 | 862 | Coils | Coil | 243 | 263 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 112 | 126 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 688 | 709 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 543 | 580 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 17 | 39 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 369 | 397 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 382 | 397 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 543 | 568 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 194 | 234 | - | - | |
Vra2g0791 | 862 | CDD | mRING-HC-C3HC5_NEU1 | 810 | 848 | - | - | |
Vra2g0791 | 862 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 862 | - | - | |
Vra2g0791 | 862 | Coils | Coil | 737 | 764 | - | - | |
Vra2g0791 | 862 | PANTHER | PROTEIN, PUTATIVE-RELATED | 1 | 862 | - | - | |
Vra2g0791 | 862 | MobiDBLite | consensus disorder prediction | 102 | 136 | - | - | |
Vra2g0791 | 862 | Pfam | Zinc finger, C3HC4 type (RING finger) | 807 | 854 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g0791 | Vra-Chr2 | 7060098 | 7064979 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g0791 | 810 | 856 | C3H Transcription Factor Family | AT3G06140 | 40.426 | 2.59e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g0791 | - | - | gmx:100801329 | 1380.93 |