Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0791 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGACTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGGCCTGGTGATGTACCTCTTGATCAAAGGAGGAATGGGTTGATTGCTGAGCTCTCTCAGGAAGATAGACTGGATATCCAAGAGAGAGGGCAGGGTCATGTTTTAGAAGATGCAGTTTTGGTTGAGAATGAATCTGAAACATGGTCACAGTCACCAAGTCATAATGAGTCCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTTAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAGTGGGTCTCGACGAAGTAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAACAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAATTGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCACTGTTAACCAGAATGGGGGCCAAAATGAGCATACACGGAGGGGCATACGGAAATTATGCGGCCGACAGGCTATCCTTGATATGCTTAAGAAGGCTGAAAGAGAGAGGCAAAGAGAAATTGAGGATTTGTCAGTACATCGGGCTGTATCTCAATTCCCCTATCGTAATCGAATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTCGATAATAACAGGCCCCTATCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAGCAAACTGTATCAGGTCTAAGGGAGGGATTTATCGCTAGAAAGGAGAATTGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATAATATTGATTTTAGCACTAATGAACAAATGGGATCAAACAGTTCACGTTTAGTCCCAATTGCTCATTCTGAGCAGTCTGACCCTAATGACAGAGGAAGCGATGGTCTCAGGGTATCAGACAGCCAGAGCTGTGTACAGGGTACCACATCTGAGAACCTAAATTGCCAAGAATCTAATGCTCAAGTAGGAGATCGAATGCAACATTTTCCGATTGAATCACTAGATTGCCAATCATCATTCAGTGCTAGTGTTGAAAGAGTGAACAACACCGAGCAAAATGTTGATGTGTTGCCTATTGATTACGGTGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCGCAGCATAGTAATAACCAGGAATTCAGCGAGGTGCATATTGAGCATTCTGGGTTGTGTGATATAAATAGTAACGAAAACAATTCTTCAAATCATGACATTCATATGGATGGTAATGTTGACGATGTAAATTGGAATGAATCTAGTACTCTGGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGACTGGTATCAGAATAATATCGAATGGAGAAATAGCGCAGAGGAAAATGCGGATGGTAATCAGATCAGTAACACAGGAAATGAGTGGCCAGAAAACACTTTGGGAAATGCGGATGGAGAAAACTCTCATCTGCAAGAATCTCATGAGGCATGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAATGCTCCAGTTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCGAACCTCCTTCACAGCAGTTTCCGGGATAGTCTGGATCAGTTAATACAATCATATGTTGAAAGGCAAGGTAATGCACACATTGACTGGGAATTGCAAGAAACAACCCCATCATCTGACTCGGTAGAGCAGGACCTTGAACAGCAAAGTAGAGATCAAATTGTTGATCAGGAGGGTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGAGATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACTTAAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCGTCTGAAGTACATGATTATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGGAAGAAATGCCCTATGTGTCAAGCACCTGTGGTGGAGGTGATAAGGGCTTACTCTATACAATAA 2589 0.4326 MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGDVPLDQRRNGLIAELSQEDRLDIQERGQGHVLEDAVLVENESETWSQSPSHNESHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSSGSRRSSGSRREWLGETEQERVRIIREWVQLSSQQRSVSSGENREEPSAEIGTQIERVRDGLTVNQNGGQNEHTRRGIRKLCGRQAILDMLKKAERERQREIEDLSVHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFIARKENCGCSQATSNVSDTSSNVDNIDFSTNEQMGSNSSRLVPIAHSEQSDPNDRGSDGLRVSDSQSCVQGTTSENLNCQESNAQVGDRMQHFPIESLDCQSSFSASVERVNNTEQNVDVLPIDYGANEITQQSLRIEDSQHSNNQEFSEVHIEHSGLCDINSNENNSSNHDIHMDGNVDDVNWNESSTLEVEQPEEAFENEGSDWYQNNIEWRNSAEENADGNQISNTGNEWPENTLGNADGENSHLQESHEAWQEDGGFQEAVENWLGGPSDHENAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRDSLDQLIQSYVERQGNAHIDWELQETTPSSDSVEQDLEQQSRDQIVDQEGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNEINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSEVHDYCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0791 862 ProSiteProfiles Zinc finger RING-type profile. 810 849 IPR001841 -
Vra2g0791 862 SUPERFAMILY RING/U-box 809 855 - -
Vra2g0791 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 794 860 IPR013083 -
Vra2g0791 862 Coils Coil 243 263 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 112 126 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 688 709 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 543 580 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 17 39 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 369 397 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 382 397 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 543 568 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 194 234 - -
Vra2g0791 862 CDD mRING-HC-C3HC5_NEU1 810 848 - -
Vra2g0791 862 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 862 - -
Vra2g0791 862 Coils Coil 737 764 - -
Vra2g0791 862 PANTHER PROTEIN, PUTATIVE-RELATED 1 862 - -
Vra2g0791 862 MobiDBLite consensus disorder prediction 102 136 - -
Vra2g0791 862 Pfam Zinc finger, C3HC4 type (RING finger) 807 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0791 Vra-Chr2 7060098 7064979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0791 810 856 C3H Transcription Factor Family AT3G06140 40.426 2.59e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0791 - - gmx:100801329 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0373 4 6598449 6603735 Vra2g0791 2 7060098 7064979 PCT