Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0790 ATGGCGAACAATACAAATTCAGAGCACTTTGTGGAGTTGTATGAAATTCGCAAAGGTTTGAAAAGGGAATTTGCCTTTGCTATGAAGGCCCAATCTCAGATATGTGATTCTCTAGGTCGAACTCGATCAAAAAAGGCTCAAACTTTGGTTGAGGTATCAACTGATTCATCCGACATGCGATACAAAAACTCTAGGTTACCAAAGATTAAAAATCTAACAAATATGGTAAAAACCAATGAAGATGTTGGTGTTGTTCTAAGTAAAAAGGAAGTAAAGAGTGATGTGATGGATACAAAGAAACTTAAAAGCCAAGTGAGTGATGAAGCAACAATGTTGGTTATGTGTGAAAAGGAGCACAATAGTGATGAACCTAAAACACATGTAGAGGATAGAGGTGTAACTATTGTTATTTGTGATGAAGTGAACAAAAATGAACCTAAGACTGAGATTGTGCAAAAACAACCTGCTTGTGATAATGACATGAAAGAGAAAGTTGACAATGATGAGATTGTTTCAACTTTGGGTTACAAGTTGAAAATCCCATTAAAGTCTACACAATCAACATTAAACAAATTAGAAAATTATGATAGCAAGGTTAAGAGTAATGGTGTTTATAAAGAAAGAAAAAATGTTTCTATGATTATTGCTTCAACTCCAATGACATCTTCTATGGCTTTTATGGGAAAAAAGTTTCCTTCCAAGCTAAAAGACCTTTTATCTTCTGGAATTCTTGAAGGACTACTTGTGAAATATGTTCGCAGCATAAAGGCAAAATCTATAGGACTTCTGGGAGTTATTTCTGGCATTGGAGTATTGTGTTATTGTGAAGTTTGTAACAAAGCTGAAGTTGTGTCACCCACAATTTTTGAGTTGCATGCTGGTAGCTCAAACAAGCGTCCTCCAGAATATATTTTCCTTGAGAATGGAAGTACTCTTCGTGATATCATGAATATATTTCTGAATATTCCATTAAACACTTTGGAGGAAGTTGTTCAAAATGCTTTGGGAGACTTCACAATGAAAAAATCTAAGTTTTGCGATTGTCAAGCTAATCTCATTTCAACAAATGACAACAATAATACCTTTGCAGTTCAATCCAGGTCTTCACAGTTAGCTACGTTTCCAAAGTCACTAAGTCGTGGAATGAAACATAACACATCTCATGGAAATAGCAGAGGAAAATTAACTAGAAAGGATTTACGCTTGCATAAACTAATATTTGAGGAAGATGGGTTGCCAGATGGAACTGAAGTTGGATACTATGTTCATGGAAAGAACCTATTATCTGGTTATAAGAATGGATCTAGAATTGTTTGTAATTGTTGCAATCGTGAGATTAGTCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCGCGACGACAACCTTATGTGCACATATGTGTATTATCTAATGGACTATCACTCCATGATTTGTCTATCTCCCTATCAGAAGGTCGCAAATTTCCTACCAATGATAATGATGACCTATGTAGTATATGCAGAGATGGAGGAAATCTTCTGTGTTGTGATGGATGCCCAAGAGCTTTTCACACAGATTGTGTATCTCTTCCATGTATTCCAAGTGGTACTTGGTATTGTAGGTATTGTCAGAATTTGTCTGAAAATAACAAATATATTGAGCATAATGAGAGTACCAAGGTTGTAGGGAGAGTTGAAGACATTGATCCCTTAGAAGAGATAAACCAGAAATGCATCCGTATTGTCAAAGAATTTGAAATTGGTGGATGTGCATTGTGTAGAAGCCAAGATTTCAGCAAAAGCTTTGGACCTCGAACAGTGATTATTTGTGATCAGTGCGAAAAAGAGTATCATATTGGGTGTTTGAAGGATCATAATATACAGAACATAGAGGAATTACCTGAAGGGAATTGGTTTTGCTGTTCAGAATGTGAGAACATTAATGCTACTTTGGTGAATTTGGTGGCTCGTGGAGAAGAGGATCTTCCAAATCCCCTCTTGAATTTGATAAAAAAGAAATACAATAACAAAGGCTTAGAATTTGGGTCTGATGTTCATATAAAATGGAGGCTTCTGAACTGGAAAGTGGGTGAATCTGAGGAAGCAAGGCAATTGCTTTCAAAAGTTGTTGCTATTTTTCATGAGCAATTTGATCCAATAGTTCATACTACAACTGGGACTGATTACATTCCAGCAATGGTTTTTGGAAGGAACATTATAGGTCAAGATTTTAGTGGAATGTACTGTATGTTACTCACTGTCAATGAAGTGGTTGTATCTGCTGGAGTTTTTCGTGTGTTTGGGTCAGAAATTGCAGAACTTCCTTTAGTGGCTACTGTTACTGATTTTCAAGGACAGGGATACTTTCAATCTCTGTTTTCTTGCATTGAGGGTTTGCTTGGATCATTGAAAGTGAAACGATTTATTCTTCCGGCTGCTGGTGAAGCTGAATCAATATGGATTAATAAATTTGGGTTTACAAAGCTACATCAAGACGAGATCAACAATTATTGGAAATATTATCACATGATGATCTTTCAAGGGACCTGTTTACTACAGAAGCAAATTCTTCAGTTTTGA 2562 0.361 MANNTNSEHFVELYEIRKGLKREFAFAMKAQSQICDSLGRTRSKKAQTLVEVSTDSSDMRYKNSRLPKIKNLTNMVKTNEDVGVVLSKKEVKSDVMDTKKLKSQVSDEATMLVMCEKEHNSDEPKTHVEDRGVTIVICDEVNKNEPKTEIVQKQPACDNDMKEKVDNDEIVSTLGYKLKIPLKSTQSTLNKLENYDSKVKSNGVYKERKNVSMIIASTPMTSSMAFMGKKFPSKLKDLLSSGILEGLLVKYVRSIKAKSIGLLGVISGIGVLCYCEVCNKAEVVSPTIFELHAGSSNKRPPEYIFLENGSTLRDIMNIFLNIPLNTLEEVVQNALGDFTMKKSKFCDCQANLISTNDNNNTFAVQSRSSQLATFPKSLSRGMKHNTSHGNSRGKLTRKDLRLHKLIFEEDGLPDGTEVGYYVHGKNLLSGYKNGSRIVCNCCNREISPSQFEAHAGWASRRQPYVHICVLSNGLSLHDLSISLSEGRKFPTNDNDDLCSICRDGGNLLCCDGCPRAFHTDCVSLPCIPSGTWYCRYCQNLSENNKYIEHNESTKVVGRVEDIDPLEEINQKCIRIVKEFEIGGCALCRSQDFSKSFGPRTVIICDQCEKEYHIGCLKDHNIQNIEELPEGNWFCCSECENINATLVNLVARGEEDLPNPLLNLIKKKYNNKGLEFGSDVHIKWRLLNWKVGESEEARQLLSKVVAIFHEQFDPIVHTTTGTDYIPAMVFGRNIIGQDFSGMYCMLLTVNEVVVSAGVFRVFGSEIAELPLVATVTDFQGQGYFQSLFSCIEGLLGSLKVKRFILPAAGEAESIWINKFGFTKLHQDEINNYWKYYHMMIFQGTCLLQKQILQF* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0790 853 Gene3D - 679 850 - -
Vra2g0790 853 CDD PHD1_AIRE 497 537 - -
Vra2g0790 853 SMART PHD_3 497 538 IPR001965 -
Vra2g0790 853 SMART PHD_3 583 639 IPR001965 -
Vra2g0790 853 ProSiteProfiles Zinc finger PHD-type profile. 495 540 IPR019787 -
Vra2g0790 853 Pfam Tify domain binding domain 264 317 IPR032308 -
Vra2g0790 853 Pfam Tify domain binding domain 432 479 IPR032308 -
Vra2g0790 853 PANTHER AUTOIMMUNE REGULATOR 1 849 - -
Vra2g0790 853 PANTHER AUTOIMMUNE REGULATOR 1 849 - -
Vra2g0790 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 641 IPR013083 -
Vra2g0790 853 Pfam PHD-finger 498 539 IPR019787 -
Vra2g0790 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 571 IPR013083 -
Vra2g0790 853 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 721 834 IPR016181 -
Vra2g0790 853 SUPERFAMILY FYVE/PHD zinc finger 583 636 IPR011011 -
Vra2g0790 853 ProSitePatterns Zinc finger PHD-type signature. 498 537 IPR019786 -
Vra2g0790 853 SUPERFAMILY FYVE/PHD zinc finger 485 538 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0790 Vra-Chr2 7035852 7047941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0790 315 850 PHD Transcription Factor Family AT2G36720 48.889 8.52e-175 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra2g0790 TDBD 3.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0790 - - pvu:PHAVU_011G087000g 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0790 2 7035852 7047941 Vra2g0790 2 7035852 7047941 ECH
Vra4g0372 4 6575190 6582814 Vra2g0790 2 7035852 7047941 PCT