Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0786 ATGTGTGAGTCCATGGGGCTGGGTGAATTCCAGAATGTTGTGCTGCAGAAGAACCACTTTGTGGGAGCTGTTGTTTGGACACCCCAAGAGGTCATNAAATTGACCATGTGTGAGTCCATGGGAGTGGTTGAATTCCATATAGTTGTGCTGCAGAGAAACCACTTGGAAGGCAAATATGTTTCTTCGATCAACCCCGAGGTGAAAACACTTCCTAGCCAAACCAAACAATGTCCAGCTGGAATAACCATTGCAAAGAAGGACAACAAATGGTATATAAGAACTGCAATCCTAGAGCACAGTCATGAGCTATGCCCAAATACTTCAAAGTTAATTGCTGGTAATAGGAAATTGAGCATGCAAGCAAAACGGACATTGGCGGTCAATGATGAAGCTGGAGTTCGGATTAATAAGAGTTACCTTAGTATTGTCAGTGATGCAGGTGGATATGATAAAATGGACTTCATAGAGCGAGATGCTAGAAACTACATTGGTAAACACAGAAGATCTTTGTGTAAGGATGGTGATGGACAATCACTGTTACGACACTTTTCAGCAATGAAAGACTTAAACAAAGATTTTTTTTACGACATTGAGTTAGATGAAGGCAATAGAATTTGTTCCGTATTTTGGGCAGATGCAAGAAGTAGAGCAGCTTGTGAAGAATTNGGTGATGTGGTGTGTTTTGACACAACTTATTTAACAAATAAGTATGATATGCCTTTTGCACCTTTCGTTGGAATTAATCATCATGGGCACTCAATATTACTTGGATGTGGACTGTTATCGTCTGAAGACACTAGCTCTTTTGTGTGGTTGTTTCAATCGTGGTTGAGATGCATGGGTAATAAAGCACCAATTGGGATTATCACAGNTCAATGTAGGGCAATGGCGAATGCCATTGAAGAAGTCTTTCCAAATACTATGCACAGGTGGTGTTTATGGCACATAATGAAAAAGTTGCCTGAAAAATTTAGTGCCTGTAAACAATATGTGACTATCAAAAGTGATATTAACAAGCTAGTCTATGATTGTGGTTGTCCAACGGAATTTGAGAATGCATGGGAAGCACTACTAACTAAACATGGATTGCATGACAATGAATGGTTGTGCACTATGTACGACGAGAGACAAAAATGGGTGCCTTGTTACTTAAGAAATCACTTTTGGGCTGGCATGTCAACTACACAAAGAAGTGAGGGAATGAATGCCTTCTTTGATGGATTTATCAATTCAAGCACAACACTTCAACAATTTGTGGTGCAATACGACAATGCTCTTAGAGTGAAAGCCCAAAAAGAAATCGAAGCTGATTTCTCGTCCCTCAACACCACGGTTGCATGTGGCTCTCAGTCACCGATAGAAAGACAATTCCAAGAAGAGTACACGCATGCGAAGTTTGAAGAAGTACAGACGGAGTTCCGGTCAAGAATGAACTGCTTCATCAAAGAAACCATTAAAGACAACTTAATTAACACTTACACAATTAAAGAGGAGCGCATGTGGGAGGGCAAATGTGCAGATAAATTTCATAAAGTTGAATTTCATCCAGTAACCAAAAATGTCACTTGTTCATGCTTATTGTTTGAGTTTAGAGGAATCATCTGTCGACATTCGCTGTTGGTATTTGGGCAGGAAGATGTTTGTAGTGTACCCTTAAAATACGTTCTTCGACGGTGGAGCAAGAATATTCGTAGAAGACACACTTTGATTAGAGCAGCGTATATTAATTCCAATCTTGAACCTGCCATGCAAAGATACCAAAGTTTGTGCAAAACATTTTATGAAATTGCAGAGGTTGCGTGTGAGTCACAACCTGCTTCTGATGGCTTGGAGAAACAACTACAACTGCTGCGTAAAACGTTTGGATGTAGTTCAACATTGACAAATAAAATAGTTAGCGATGGAGGCGAACTACGTTATGAAAATGCGGTACCCAATTCAACAGCGGACAATGAAGGTGAAGGTGTTGATGTACTTGTGCGTAGTCCTAAATCAGTTAAACGCAAAGGACGACCACGCACAAACAGGTTGAAGTCAGCCGTTGAGAAAAGGACGAAAAAAGGCAAATCTGTCTCAACTCAAAAGACTTCAAATATCTTCATTGAAGAATGTGANACAACGTTACCAAATGAAAGACAAAGTCAGGAGGTAATGCAGTTTGGATCCCAAATTTACGAATGCTACCAAGTCTCACAACAATCCAACGTCCCTGAACCCGGGTTTATGTCCTTGTTAAATGCCGTACACAACAACTTTGATGACAACATACTTTGA 2274 0.4002 MCESMGLGEFQNVVLQKNHFVGAVVWTPQEVXKLTMCESMGVVEFHIVVLQRNHLEGKYVSSINPEVKTLPSQTKQCPAGITIAKKDNKWYIRTAILEHSHELCPNTSKLIAGNRKLSMQAKRTLAVNDEAGVRINKSYLSIVSDAGGYDKMDFIERDARNYIGKHRRSLCKDGDGQSLLRHFSAMKDLNKDFFYDIELDEGNRICSVFWADARSRAACEEXGDVVCFDTTYLTNKYDMPFAPFVGINHHGHSILLGCGLLSSEDTSSFVWLFQSWLRCMGNKAPIGIITXQCRAMANAIEEVFPNTMHRWCLWHIMKKLPEKFSACKQYVTIKSDINKLVYDCGCPTEFENAWEALLTKHGLHDNEWLCTMYDERQKWVPCYLRNHFWAGMSTTQRSEGMNAFFDGFINSSTTLQQFVVQYDNALRVKAQKEIEADFSSLNTTVACGSQSPIERQFQEEYTHAKFEEVQTEFRSRMNCFIKETIKDNLINTYTIKEERMWEGKCADKFHKVEFHPVTKNVTCSCLLFEFRGIICRHSLLVFGQEDVCSVPLKYVLRRWSKNIRRRHTLIRAAYINSNLEPAMQRYQSLCKTFYEIAEVACESQPASDGLEKQLQLLRKTFGCSSTLTNKIVSDGGELRYENAVPNSTADNEGEGVDVLVRSPKSVKRKGRPRTNRLKSAVEKRTKKGKSVSTQKTSNIFIEECXTTLPNERQSQEVMQFGSQIYECYQVSQQSNVPEPGFMSLLNAVHNNFDDNIL* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0786 757 ProSiteProfiles Zinc finger SWIM-type profile. 510 546 IPR007527 GO:0008270
Vra2g0786 757 Pfam SWIM zinc finger 522 542 IPR007527 GO:0008270
Vra2g0786 757 PANTHER OS03G0843700 PROTEIN 66 580 - -
Vra2g0786 757 SMART 26again6 521 548 IPR006564 GO:0008270
Vra2g0786 757 Pfam MULE transposase domain 225 319 IPR018289 -
Vra2g0786 757 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 580 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0786 Vra-Chr2 7018316 7021424 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra2g0786 MULE 1.1e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0786 - - vra:106778928 1552.73