Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0783 ATGATGCCAAAGGCTACATCTTCCTCCTCAAACGATTTTCAAGCATCTCAAATGTTTCCTGTGAATGAATATTTGGCTTCATCTTCTGTTGAACTAAGTTCTTCCTCAACTTCACACTCTTCTACCTCCCTCCTCTGCTATCTCTCTATTCTCAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTCTTGTCACCCCTCAACATAACCTAACTCCCATGGCAATCTCCACCATGAACGCAACACTCCAAGAAATCATAGTGGCAGCAACATCAATGAGATTCACCTGTCAGCAAATGACTCTCGGTTCCTCTTCAGGTACTAGTATTGCTAATGAATTGCACCGAAACCAGAACCAGCAACAACTTGATCATGGTAGGGTATTATCACCTCATCATCCATCAAACTTTGGCAACAACAATAGGGGTATGCTTAGTATGAGTAGCATTAGCATGAGCTCTTATATGATTAGAGGGCAAAGTGAATTCTTATCTGGTATAGAAGGAGGGGCACTAGATTGGTTTGGTGAAAGCTACAACAATAACAATATTGGAGATTGTAATAACATTAAGGATGAAGAAGCCGACAGGAAGATGATGATGATGGGAGAGAGTGATATAATCGAATTGGATGCTGCTGATTTGCTTGCGAAGTACTCGTATTTTTGCCAAGTGTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAGTGCAGCTTTGAGCAACCCAATGAAAAGCAGGGATAGTTTATTGGGTGAGGGAAGTTCCAGCAAGAAATATTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAACATGCCAAGTTCCAGCCATTGAAGTCAATGATCTGTGCTAAAAACTATTATAATGGTATATGCAGTTGTCAGAGTAACACACAATCAAAACGAAAACAATGTAATTCATAG 969 0.418 MMPKATSSSSNDFQASQMFPVNEYLASSSVELSSSSTSHSSTSLLCYLSILKDKLGQLQNLVDVLVTPQHNLTPMAISTMNATLQEIIVAATSMRFTCQQMTLGSSSGTSIANELHRNQNQQQLDHGRVLSPHHPSNFGNNNRGMLSMSSISMSSYMIRGQSEFLSGIEGGALDWFGESYNNNNIGDCNNIKDEEADRKMMMMGESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALSNPMKSRDSLLGEGSSSKKYSCPQEGCRWNQKHAKFQPLKSMICAKNYYNGICSCQSNTQSKRKQCNS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0783 322 PANTHER OS08G0562300 PROTEIN 7 304 - -
Vra2g0783 322 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Vra2g0783 322 Gene3D Classic Zinc Finger 218 246 - -
Vra2g0783 322 SMART c2h2final6 222 244 IPR013087 -
Vra2g0783 322 SUPERFAMILY beta-beta-alpha zinc fingers 220 247 IPR036236 -
Vra2g0783 322 MobiDBLite consensus disorder prediction 253 271 - -
Vra2g0783 322 MobiDBLite consensus disorder prediction 251 271 - -
Vra2g0783 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 249 IPR013087 -
Vra2g0783 322 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 304 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0783 Vra-Chr2 6997505 6998680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0783 41 303 C2H2 Transcription Factor Family AT5G22890 42.182 1.11e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0783 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0783 - - vra:106778919 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0369 4 6553518 6554916 Vra2g0783 2 6997505 6998680 PCT