Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0781 ATGGAGATGGAAGGGTTAGATTCCAATTCTAATTCCAACTCCTATTCTAGCTCTGCCCAGAGCAACATAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGTCGTTGTTACCACCGCCGCCACCACTGGGGTCACCACCAGTTGCTCAAGTCCTAACTCCGGTGGCTCCTCCACCACCACCTGTGAGAGCGAAGAAGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACTCTCATCAACCTCGTCATCACAGACAACAAGTTGAAGATCATAACGGTGTCAAGACAGCAAAGGGTAACGCTAACACCATCACCACCACCGCAACAACCGCAGTTGACACCAAAGTCGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACATTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCACAAAAAGCCAAAACTTTCGCCTGAAGAGAAAAAACCACCACCCTCTCAATCGCCACACGTGGCTGTTACAACCTATGATCGGTTCGAAGAGGATAACGTTAAAAGCGGTCCTCCGATTTCCCTTCAATTGGGTCACGGCAACAACAAGGGCAAGATTCATGAATGTTCCATCTGCGGTTCGGAGTTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGTCATCGACAAACACCAACACTGTTGACACATCAAGTTCTAACACCGTCATCGGCGTGGCAACCACTGTTTCGCCGCCGCGGAACGTCTTGGAGTTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 900 0.4978 MEMEGLDSNSNSNSYSSSAQSNIAKGKRTKRMRLLSPSGVVVVTTAATTGVTTSCSSPNSGGSSTTTCESEEEDMANCLILLAQGGESHSHQPRHHRQQVEDHNGVKTAKGNANTITTTATTAVDTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLSPEEKKPPPSQSPHVAVTTYDRFEEDNVKSGPPISLQLGHGNNKGKIHECSICGSEFSSGQALGGHMRRHRSSTNTNTVDTSSSNTVIGVATTVSPPRNVLELDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0781 299 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g0781 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Vra2g0781 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Vra2g0781 299 MobiDBLite consensus disorder prediction 228 243 - -
Vra2g0781 299 SUPERFAMILY beta-beta-alpha zinc fingers 133 230 IPR036236 -
Vra2g0781 299 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Vra2g0781 299 Pfam C2H2-type zinc finger 133 158 - -
Vra2g0781 299 Pfam C2H2-type zinc finger 208 232 - -
Vra2g0781 299 PANTHER ZINC FINGER PROTEIN ZAT5 1 299 - -
Vra2g0781 299 MobiDBLite consensus disorder prediction 1 32 - -
Vra2g0781 299 SMART c2h2final6 208 230 IPR013087 -
Vra2g0781 299 SMART c2h2final6 133 155 IPR013087 -
Vra2g0781 299 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Vra2g0781 299 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 299 - -
Vra2g0781 299 MobiDBLite consensus disorder prediction 146 175 - -
Vra2g0781 299 MobiDBLite consensus disorder prediction 223 243 - -
Vra2g0781 299 Gene3D Classic Zinc Finger 130 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0781 Vra-Chr2 6984796 6985989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0781 18 299 C2H2 Transcription Factor Family AT2G28200 41.613 4.21e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0781 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0781 - - vra:106755606 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0368 4 6546003 6547306 Vra2g0781 2 6984796 6985989 PCT