Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0779 ATGGACAAAAGCTATCTTCATCAAGAGACTCTACTGCACATTGATGACTCTGAGCTACACGACTTTGATGAAGATCCTAGCTTAGATCATTTGATCAATTTCATTCGTTTGGAGAAGAAAGATGCTACTTGTGACTTCAATTCTGAGCTTATCAACGAAGCATTCATTGATAACTCTTTCTTGCCACACCCTGCAATCCCATATGATCAGTGCAATAGTAATGCTATGAATGTCTATGATTCAAACTCCTTCTCTTGTTTTGATGGGGAAGCCAGAGGAGGAGGAGGAGGAGGAGAAGAGGAAGATGACATGGAGCACTCATATGCAACAACAAGCACAACAACATCAACACCTAATAAGTCAAAACCAAAAACTGACAGATCCAAAACTCTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTTATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTGTCATATATGCACGAGCTTCAAGCACAAGCCAACATGCTTAAGGCTGAGGTTGAAGCACTTGAAACTTCCTTACTGCTGTCTAAAAACTATCAAGGATCAGTTGAAAATCCCATGAAGGATGAACTTACCAATAACATCCTTTCAATACGCAAGAAGATAATCCAGATGGATATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGCTGGCTGCCTCATTGTACAAAGCTCTAGAGTCTCTGACAGGCTTTCATGTTCAGAATTCAAACTTATCCACAGTTGGTAACAGTTTTCAACTTACATTTTCATTGAATGTGAAAAACTCTGAGCCAGAAATTAACCTGCACACCATGAAGATTTGGGTGTGTGAAGCCTTTGTGAAGCAAGGCTTTGAATTCATACCACTTTTAATGCTTGACTCTTTCAATCTGTAA 963 0.3936 MDKSYLHQETLLHIDDSELHDFDEDPSLDHLINFIRLEKKDATCDFNSELINEAFIDNSFLPHPAIPYDQCNSNAMNVYDSNSFSCFDGEARGGGGGGEEEDDMEHSYATTSTTTSTPNKSKPKTDRSKTLISERRRRDRMKEKLYALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKAEVEALETSLLLSKNYQGSVENPMKDELTNNILSIRKKIIQMDMFQVDAKGFYVKIVCNKGEGLAASLYKALESLTGFHVQNSNLSTVGNSFQLTFSLNVKNSEPEINLHTMKIWVCEAFVKQGFEFIPLLMLDSFNL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0779 320 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Vra2g0779 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Vra2g0779 320 Gene3D - 117 191 IPR036638 GO:0046983
Vra2g0779 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 194 IPR036638 GO:0046983
Vra2g0779 320 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 311 - -
Vra2g0779 320 SMART finulus 131 180 IPR011598 GO:0046983
Vra2g0779 320 Coils Coil 171 191 - -
Vra2g0779 320 MobiDBLite consensus disorder prediction 90 135 - -
Vra2g0779 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0779 Vra-Chr2 6958512 6960046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0779 11 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.231 9.67e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g0779 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0779 - - var:108339427 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0779 2 6958512 6960046 Vra2g0779 2 6958512 6960046 ECH
Vra4g0365 4 6517020 6518928 Vra2g0779 2 6958512 6960046 PCT