Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0777 ATGGAAACCACCGCAAAGGTTGTTTCATCTAATTGTCTTCTTGTATCAGAGTACTCTGAGTCTAACCCCACGCAACTTTCTGCTATGGAACTTGGGATTCAGAATTTTGGGTGCACGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGCTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAATGAAGCTAAGAACTCTGAGGAGGTTGATGTTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATCTGCTCTTTATGTGACACAGAGCAAGATGTTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGATATATGCAAATTCTTTGATGATGATACTTCAAAGAACCAATACCACTGTGAAGAATGTGGCATTTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGCAAGAAATGTGGATGTTGCTACTCCAAGGTAATGGAAAAGGGTCACCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGCGCGCACACTATACATTTAGACTGTGTCAAAGAGATGGAAAAACATCATAGGTACTCATGTCCTGTGTGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGCTTGACAAAGTGGTTGCCTTAACTCCAATGCCGGAAACCTTAAAAAACAAGATGGTGTGGATTCTTTGCAATGATTGTGGAGTGAAATCTCATGTTCAATTCCATATTGTGGCACATAAGTGTTTAAGTTGCAATTCATACAACACAAGACAGATACAGGGAGCACCTGCTACACCAGGCTCGTCTAGAGTGACAGAAATGGTGATATGA 897 0.4158 METTAKVVSSNCLLVSEYSESNPTQLSAMELGIQNFGCTHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEVDVVDRHDVPRHEIKKVICSLCDTEQDVQQYCINCGVCMGKYFCDICKFFDDDTSKNQYHCEECGICRTGGKDNFFHCKKCGCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHHRYSCPVCSKSICDMSSLWKKLDKVVALTPMPETLKNKMVWILCNDCGVKSHVQFHIVAHKCLSCNSYNTRQIQGAPATPGSSRVTEMVI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0777 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 246 IPR013083 -
Vra2g0777 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 22 296 - -
Vra2g0777 298 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 22 296 - -
Vra2g0777 298 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Vra2g0777 298 Gene3D - 247 286 - -
Vra2g0777 298 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Vra2g0777 298 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Vra2g0777 298 SUPERFAMILY RING/U-box 173 220 - -
Vra2g0777 298 Pfam Zinc-ribbon 221 279 IPR039512 -
Vra2g0777 298 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Vra2g0777 298 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Vra2g0777 298 Pfam RING-type zinc-finger 174 214 IPR027370 -
Vra2g0777 298 SMART ring_2 174 216 IPR001841 -
Vra2g0777 298 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0777 Vra-Chr2 6944688 6947443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0777 34 288 C2H2 Transcription Factor Family AT3G18290 40.613 8.62e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0777 K10144 - gmx:100812709 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0777 2 6944688 6947443 Vra2g0777 2 6944688 6947443 ECH