Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0775 ATGCTCCCATTGCATTTTCGATCCTCTTTTGGTTCTTCTTTTCGTCTATGTTTCTGTTTCTCTCGAACTGTTAGGGTTTCGTCTCTCGTCTCTTTCCCTCTGTCTCTCTTCTCTGTCTCTCTCCGCGTCATGTCTAAGCCACCCTCCGCCTTCGACGCTCTCATGTCCGCCGCTAAGAAGAATTCCAAATCCAAAACATCCAAGCTTTCATCACCTCCCAAGAAAAGAAAATCTCCACTCTCCACTTCTTCACAAAATCCTAGCAACCCCAAATCCCCCAAATTGCCTTCTCCGCCCATAACTGTTGTTGAACCGGAGCAAGCAGTTAAACAAGAAGAACTTGTTAAACCAGTTAAACAAGAAGAACTTGTTAAACCAGAAGCTGTTAAGCCGGAGCCGCGGAAGGTACGCCAACTGTTAACGTCTTCTTCTTCGAAGGGGAAGACCGAGGAGCTGAAGAAGCAAGTTCCGCAGCTGAAGCAGAAGCCTTCCAGTTTCGATCCCGCTTCGATTATTGCATGGGAGAAGGGACAGCCCGTGCCGTTTCTCTTTCTCGCCTTGGCATTCGATATGATTTCTCAGGAAAGTGGAAGAATAGTCATCACTGACATTGTTTGCAATATGCTGCGGACTGTGATGCTGACCACGCCAGAGGATCTTGTTCCCGTCGTTTACCTCTCCGCAAATCGGATTGCGCCTGCTCATGAAGGATTGGAATTGGGAATCGGCGAGTCGATCATTTCCAAGGCGCTCGCTGAGGCTTATGGAAGGAACGAGAATTGGATTAAGACTCAGTATCAGAAAAAAGGTGATTTAGGCTTGGTTGCTAAAGAGAGTCGTTCGTCTCAACCTATGATGTGGAAGCCTGAAGCATTAACCATCAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAATCATATCAAGGCACTTCTCGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTTTGCTTCAGACGAAGTTGCGAATTGGTTATGCAGAACAAACTCTGTTGGCTGCACTAGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGAAGCTTCCAAAAACTTGTAAATTTACTCCAGGTGTTCCAATTAGACCTATGCTATCAAAGGCAGCAAAAAGTGTAACTGAAGTTCTGAACAAATTCCAGGATGTGGAATTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTGAAGAAAACAAGTGTATCTTCATTTATTCTTGATTGTGAAATTGTCGCATATGATCGTGCAACACAAAAACTTCTTTCTTTCCAGACCCTCAGTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTCTGTGTATTTGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTTAGAGTCCGCAGAGAGCACCTTTATGCCTCTTTTGAGGAAGAATCTGGTTTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAGAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTGATTATTAAGACATTAAATGAGGACGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGACTTGGTACCTATTGCTGCTTTCCATGGGCGTGGTAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAACTATTTGCAAGATTGGAACGGGGTTCTCTGAATCTGTACTTGTAGAACGTTCTTCCAGTCTTCGTTCTCAAGTGATTTCCAAGCCGAAGTCGTACTATAGATTTGGGGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAGAGCGGCAGACCTGACCATTAGCCCTGTCCACCGTGCTGCAGCGGGCATAGTAGATCCGAACAAGGGCATCTCTCTTCGTTTTCCAAGGCTGGTTCGAGTCCGGCATGACAAAGCTCCTGAACAGGCCACATCATCTGAGCAGATTGCTGAGTTGTATAAAGCCCAAAAATACAATCAAGCGAACAAACAAGATGACGAAGATGAAGAAGATTATTGA 2394 0.4365 MLPLHFRSSFGSSFRLCFCFSRTVRVSSLVSFPLSLFSVSLRVMSKPPSAFDALMSAAKKNSKSKTSKLSSPPKKRKSPLSTSSQNPSNPKSPKLPSPPITVVEPEQAVKQEELVKPVKQEELVKPEAVKPEPRKVRQLLTSSSSKGKTEELKKQVPQLKQKPSSFDPASIIAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLTTPEDLVPVVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNENWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWKLPKTCKFTPGVPIRPMLSKAAKSVTEVLNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKTSVSSFILDCEIVAYDRATQKLLSFQTLSTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQTICKIGTGFSESVLVERSSSLRSQVISKPKSYYRFGETINPDVWFEASEVWEVRAADLTISPVHRAAAGIVDPNKGISLRFPRLVRVRHDKAPEQATSSEQIAELYKAQKYNQANKQDDEDEEDY* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0775 797 CDD OBF_DNA_ligase_I 635 780 - -
Vra2g0775 797 MobiDBLite consensus disorder prediction 125 161 - -
Vra2g0775 797 Pfam ATP dependent DNA ligase domain 423 627 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vra2g0775 797 Gene3D DNA ligase/mRNA capping enzyme 452 577 - -
Vra2g0775 797 CDD Adenylation_DNA_ligase_I_Euk 412 630 - -
Vra2g0775 797 Pfam DNA ligase N terminus 181 356 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vra2g0775 797 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 58 796 - -
Vra2g0775 797 MobiDBLite consensus disorder prediction 59 90 - -
Vra2g0775 797 Gene3D - 157 425 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vra2g0775 797 Pfam ATP dependent DNA ligase C terminal region 652 763 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vra2g0775 797 ProSiteProfiles ATP-dependent DNA ligase family profile. 529 665 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vra2g0775 797 ProSitePatterns ATP-dependent DNA ligase signature 2. 601 627 IPR016059 GO:0003909
Vra2g0775 797 SUPERFAMILY Nucleic acid-binding proteins 635 781 IPR012340 -
Vra2g0775 797 PANTHER DNA LIGASE 1 58 796 - -
Vra2g0775 797 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 239 779 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vra2g0775 797 MobiDBLite consensus disorder prediction 56 100 - -
Vra2g0775 797 Gene3D - 433 631 - -
Vra2g0775 797 Gene3D - 632 795 IPR012340 -
Vra2g0775 797 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 447 455 IPR016059 GO:0003909
Vra2g0775 797 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 415 633 - -
Vra2g0775 797 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 163 414 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0775 Vra-Chr2 6917814 6927170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0775 27 795 Core DNA Replication Machinery Family AT1G08130 64.841 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0775 K10747 - gmx:100783155 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0775 2 6917814 6927170 Vra2g0775 2 6917814 6927170 ECH