Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0767 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAGTGTTAAGAAAGGGCCATGGTCACCAGAAGAAGACACAAAGCTGAAGGAGTACATAGACAAGAATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGTGGGAAGAGTTGCAGATTGAGATGGCTCAATTATCTCAGACCCAACATTAAGCATGGAGATTTCTCAGATGAAGAAGACAGAATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGAACTGACAATGATATCAAGAACTACTGGAATACCAAGTTGAAGAAGAAGCTCATTGGGTTGCTTCCTCTTTCTCATCACACAAAACAACCTTCATTTCCATCATCTTCCCTTCAAAACCCTCCACCCTCTCCTTCGTCTCACCAACTGTACGGAGAATACGGCAACTACATCCCAGTAACAGCATCTTTCACCGGCATGGAACATCTTTCTCTTCCTTCAGCTAACTATGAAAGCACAACAGCCTCAGTTTCTAAAACTTTCTACCAAAACCAAGACTCCATGGTCAGCGTTAGTCCCATGCAATGCTATTACCCTGTCAGTGACAGCATGCTCATGTTTGGAAGCGAAGGAAGTTGCAGTTCCTCCGACGGAAGCTGCACTCAGGGAAGAGAAATGAAGCAAGAAGAAATCGGTTACCAGAGCTACAACCATAACTTGATGCTCAGTTACAACACCAACGATGGAGATAAGTCGTGTGTTGGAGGGTGCTTCGACCAAACGCTAACAACGTTGGATTATGATCTTGAGGATATTAAGCAACTGATTAGCAGCAGTAGCAGCAGCTTGAATAATAATGTTGATGAAAACAAGAGAGAAGAGAAGGCGATGTACTGCTGCTATTACTAG 927 0.4369 MGRAPCCDKASVKKGPWSPEEDTKLKEYIDKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLIGLLPLSHHTKQPSFPSSSLQNPPPSPSSHQLYGEYGNYIPVTASFTGMEHLSLPSANYESTTASVSKTFYQNQDSMVSVSPMQCYYPVSDSMLMFGSEGSCSSSDGSCTQGREMKQEEIGYQSYNHNLMLSYNTNDGDKSCVGGCFDQTLTTLDYDLEDIKQLISSSSSSLNNNVDENKREEKAMYCCYY* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0767 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra2g0767 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra2g0767 308 CDD SANT 71 111 IPR001005 -
Vra2g0767 308 CDD SANT 16 62 IPR001005 -
Vra2g0767 308 Gene3D - 70 137 - -
Vra2g0767 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra2g0767 308 PANTHER TRANSCRIPTION FACTOR RAX3 1 291 - -
Vra2g0767 308 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra2g0767 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra2g0767 308 Gene3D - 7 68 - -
Vra2g0767 308 PANTHER OS09G0431300 PROTEIN 1 291 - -
Vra2g0767 308 SMART sant 13 64 IPR001005 -
Vra2g0767 308 SMART sant 67 115 IPR001005 -
Vra2g0767 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra2g0767 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0767 Vra-Chr2 6813654 6815745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0767 1 119 MYB Transcription Factor Family AT5G57620 90.756 5.47e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0767 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0767 K09422 - gmx:100779919 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0767 2 6813654 6815745 Vra2g0767 2 6813654 6815745 ECH
Vra4g0357 4 6431176 6433188 Vra2g0767 2 6813654 6815745 PCT