Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0764 ATGGTTAACTCTGAAATGAATAGATCCGGGTACGGTGCTGACGGAATATACCGGTCTCTAAGGCCTTCTTTAGTTCTTCCACGGAACACCAGTCTTTCACTCGTTTCGTTTCTCTTCCAGAGCGTTTCTTCTTTTCCATCCAAAACCGCTCTGGTAGATGCTCATTCTTCTCAAACCCTCTCCTTTGCACAGCTCAAAGCCCAAGTAGCAAGGCTCGCCCATGGTTTTCTCAAACTGGGAATAAAGAAAAACGACGTCGTCCTTCTCCTCGCTCCCAACTCCATCCACTACCCCGTTTGCTTCCTCGCCGCCACCGCCATTGGAGCCATTGTCTCCACAGCCAACCCCATTTACACTGTCCACGAACTCTCCAACCAAGTCAAAGATTCCAACCCCAAACTGTTGATCACAGTTCCTGAACTATGGGACAAAGCAAAGAATCTCAACCTCCCCACTGTCTTTCTCGGCGGCACCAACAACAACCTTCAGGACCCAACTAAAGGCGTGTCACCGAAAATCAGAACTCTCCATGCACTAATGGAGATGGCAGGGCCGGTGACGGAGCTGCCGGAGAGTGGGATTAAGCAGGGGGACACGGCGGCGCTGCTGTACTCCTCGGGAACCACTGGGCTGAGCAAAGGCGTCGTCCTGACACATGGGAACTTCATCGCGGCTGCTTTGATGATCAGCATGGACGACGACCTGGCTGACGAGGTAGACGACGTGTTCCTCTGTGTTTTGCCGATGTTCCATGTGTTTGGGCTGATGGTGGTGACGTACACAGCACTGCGACGAGGGAGTGCAGTGGTGATTATGGAGAAGTTTGAGTTGGAGGCCTTTTTAAATGCTATTGAGAAGCACAGAGTGACGAAGTTGTGGTTAGTGCCTCCTATTCTTCTTGCTATGGCGAAACAACAGAGTGTAGTTCGGAACTACAATCTCTCTTCTTTGAAGCGGATAGGCTCTGGTGCTGCTCCTCTTGGAAAAGAGTTGATGGAAGAATGTGGCAAGCATTTCCCTCATGTAGTTGTTTGTCAGGGCTACGGCATGACAGAAACTTGTGGCATTGTCTCTGTGGAGAATCCAAGAGCAGGGATTCGTCATACTGGGTCAACGGGAATGCTGGCTTCGGGAGTGGAAGCTCAAATAGTGAGTGTGGAAAAACAAAAGCCTCTCCCTCCTAAACAGTTGGGGGAAATATGGGTGCGAGGTCCCAACATGATGAAAGGTTATCACAACAATCCACAGGCCACGAGATTGACCATAGATGAAAAGGGGTGGGTGCACACAGGAGATCTTGGATATTTTGATGAAGATGGACACCTTTATGTGGTTGACCGTATAAAAGAACTGATCAAGTACAAAGGTTTTCAGGTAGCACCAGCTGAACTTGAAGGCCTTCTCATTTCTCATCCTGGAATATTAGAGGCTGTTGTTGTCCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTAAGAAGTTCATTGCTGATCAGGTTGCGCCTTTCAAAAAATTGAGAAGGGTGTCATTCATCAGTAGTATTCCAAAGACATCTTCAGGAAAAATTCTTAGAAGAGAGATTGCTGCAAAAGCTCGATCCAAAATTTAA 1659 0.481 MVNSEMNRSGYGADGIYRSLRPSLVLPRNTSLSLVSFLFQSVSSFPSKTALVDAHSSQTLSFAQLKAQVARLAHGFLKLGIKKNDVVLLLAPNSIHYPVCFLAATAIGAIVSTANPIYTVHELSNQVKDSNPKLLITVPELWDKAKNLNLPTVFLGGTNNNLQDPTKGVSPKIRTLHALMEMAGPVTELPESGIKQGDTAALLYSSGTTGLSKGVVLTHGNFIAAALMISMDDDLADEVDDVFLCVLPMFHVFGLMVVTYTALRRGSAVVIMEKFELEAFLNAIEKHRVTKLWLVPPILLAMAKQQSVVRNYNLSSLKRIGSGAAPLGKELMEECGKHFPHVVVCQGYGMTETCGIVSVENPRAGIRHTGSTGMLASGVEAQIVSVEKQKPLPPKQLGEIWVRGPNMMKGYHNNPQATRLTIDEKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQVAPAELEGLLISHPGILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIKKFIADQVAPFKKLRRVSFISSIPKTSSGKILRREIAAKARSKI* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0764 552 Gene3D - 450 551 IPR045851 -
Vra2g0764 552 CDD 4CL 26 543 - -
Vra2g0764 552 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Vra2g0764 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 551 - -
Vra2g0764 552 Pfam AMP-binding enzyme 40 454 IPR000873 -
Vra2g0764 552 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Vra2g0764 552 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 9 551 - -
Vra2g0764 552 Gene3D - 14 449 IPR042099 -
Vra2g0764 552 SUPERFAMILY Acetyl-CoA synthetase-like 26 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0764 Vra-Chr2 6784923 6788128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0764 6 552 Monolignol Biosynthesis Gene Families AT4G05160 67.459 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0764 K01904 - gmx:100808944 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0764 2 6784923 6788128 Vra2g0764 2 6784923 6788128 ECH
Vra4g0356 4 6420530 6424537 Vra2g0764 2 6784923 6788128 PCT