Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0762 ATGGTGTCGGACGCTAGCAAGAAGAAGGCTGCACAGAAGAAGGCCGCCGCCGCCGCTAAAAGAGGTGGAAAGGCCGCCGCCGCTGCCGTCGCCGCTGCTGCATCTTCCAAAGCTGCCGATAAGGCCGCCAACGGAATAGCCGATATGCATATATCTGATCGGACCTGTACCGGTGTCCTCTGTTCACATCCTCTTTCCAGAGATATTCGAATAGAGTCTCTGTCTGTTACATTCCATGGACATGATCTCATTGTTGATTCTGAACTGGAGCTTAACTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAATCTACACTGCTTACAGCCATTGGTATGCGGGAACTTCCAATTCCTGAACATATGGATATCTATCACCTCACTCGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCGGCACAGGATGATGGAGGTGGTGAGTCCCTGGAACGTGTTTATGAGCGATTGGATGCCTTAGACGCAGCAACTGCAGAAAAACGTGCTGCGGAAATCTTATATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAAAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGAATTGCATTAGCACGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAGCCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTATACTGGTAACTATGATCAATATGTTCAGACTCGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTATAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTTGGTCATGGTTCTGCAAAACTTGCTCGCCAGGCACAGAGTAAGGAGAAAACATTGGCAAAAATGGAACGTGGAGGACTTGCAGAAAAAGTGGTCAGGGACAAGGTTTTGGTTTTCCGTTTTACTGATGTTGGAAAACTTCCCCCTCCTGTTCTCCAGTTTGTTGAGGTGTCGTTTGGTTACACTCCTGATAACCTCATATACAAGAACATTGACTTTGGGGTTGATTTAGATTCTAGGGTCGCACTGGTTGGACCCAATGGGGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGATTTGATGCCTTCTGATGGCATGGTGAGGCGTCATAATCATCTTCGGATTGCTCAATATCACCAGCATTTGGCTGAAAAGCTAGACTTGGATATGTCTGCTCTACAGTTTATGATTAAAGAATATCCTGGAAACGAGGAAGAGAAGATGAGGGCAGCGATAGGGAAGTTTGGTCTATCAGGTAAAGCCCAGGTGATGCCAATGAAGAACTTGTCTGATGGGCAGAGGAGTCGGGTGATATTTGCCTGGTTAGCTTGGAGGCAGCCACAAATGCTTCTTTTGGATGAACCAACCAATCATTTGGATATTGAGACAATTGATTCTTTGGCTGAGGCATTGAATGAATGGGACGGTGGCTTGGTGCTTGTTAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTAATCAAAGTGTGACTAGATGGGAGGGTGACATTATGGAATTCAAGGCACATCTAAAGGCCAAGGCGGGTTTATCTGACTAA 1788 0.4508 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVAAAASSKAADKAANGIADMHISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLDALDAATAEKRAAEILYGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDLDMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKAKAGLSD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0762 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Vra2g0762 595 Coils Coil 287 307 - -
Vra2g0762 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 316 IPR027417 -
Vra2g0762 595 CDD ABCF_EF-3 380 571 - -
Vra2g0762 595 SMART AAA_5 405 593 IPR003593 -
Vra2g0762 595 SMART AAA_5 93 295 IPR003593 -
Vra2g0762 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 574 IPR027417 -
Vra2g0762 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Vra2g0762 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Vra2g0762 595 Pfam ABC transporter 280 356 IPR032781 -
Vra2g0762 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Vra2g0762 595 CDD ABCF_EF-3 69 286 - -
Vra2g0762 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Vra2g0762 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
Vra2g0762 595 PANTHER - 1 595 - -
Vra2g0762 595 Gene3D - 69 333 IPR027417 -
Vra2g0762 595 Gene3D - 345 593 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0762 Vra-Chr2 6752157 6755635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0762 380 567 Calmodulin-binding Proteins AT2G36910 25.688 2.04e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0762 K06185 - gmx:100809491 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0762 2 6752157 6755635 Vra2g0762 2 6752157 6755635 ECH
Vra4g0354 4 6369495 6373968 Vra2g0762 2 6752157 6755635 PCT