Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0760 ATGTCTCACCATGCTGAATCGTCCGACTCGAATCCTGAGAAGAAAGACTTCTCGACAGCGATTCTGGAGCGGAAAAAATCTCCTAACCGTTTGGTGATCGACGAAGCGGTTACCGATGATAACTCAGTGGTTTCCATGCATCCTGAAACCATGGAGAAAAATAAACTTTTTCACGGAGATGCTATCCTCATCAAGGGAAAGAAACGTAGGGACACGATTTGCATTGTTCTGGCAGACGAGAAATGTGAGGAAGCGAAGTTAAGGATGAATAAAGTTGTGAGGTGGAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTCTATTGCTCTGAAGTTCCGTATGGGAAGCGTGTCAGCGTTCTTCCCATTGATGATACCATTGAAGGTCTCACTGGCAATCTCTTTGATTCATATTTGAAACCATATTTCTTTGAGGCTTATCGTCCTCTGAGAAAGGGAGATCTATTTCTGGTTCGAGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTGTTGTCTGGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAACCTGTGAAAAGAGAGGATGAAGAAAGGCTGGATGATGTTGGGTATGATGATGTGGGTGGCGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCTCTTAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTCTTCTGTATGGACCCCCAGGATCTGGTAAGACCTTGATAGCAAGAGCTGTTGCTAATGAGACAGGAGCCTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAAATGGCTGGAGAGAGTGAAAGCAACCTTAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCCCCCTCCATCATATTTATTGATGAGATTGATTCTATTGCACCCAAGCGAGAGAAAACACATGGTGAAGTTGAAAGGAGGATTGTTTCTCAACTTTTGACTCTTATGGATGGATTGAAATCTCGTGCACATGTTATTGTTATTGGAGCTACGAATCGGCCAAATAGCATTGACCCTGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCAGACTTGAAGTCCTTCGCATACATACCAAAAACTTGAAGCTTTCAGATGATGTTGATTTAGAGAGAATTTCAAAAGATACTCATGGATATGTTGGTGCCGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGCATCCGGGAGAAGATGGATGTCATTGATTTGGAAGATGAGAGCATTGATGCTGAAATACTGAATTCTATGGTCGTTTCAAATGAACATTTCCTTACTTCTTTAGGAACTAGCAATCCATCTGCTTTACGTGAAACTGTTATCGAGGTGCCCAATGTCAGTTGGGCAGATATTGGAGGTCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCCGTGGAGCACCCTGAAAAATTTGAGAAATTTGGTATGTCACCATCAAAAGGAGTTCTGTTCTATGGTCCTCCTGGATGTGGAAAAACTTTGTTGGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAGGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTCTTCTTTGACGAGCTTGATTCTATTGCTATCCAGAGAGGAAGTAAAGTTGGGCATGGTGGTGAAGCTGCTGATAGAGTTCTGAATCAACTTCTCACTGAAATGGATGGCATGTCTGTTAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGATATCATTGACCCAGCTCTTCTACGGCCGGGCCGTCTAGATCAACTGATCTATATTCCTCTCCCTGATGAAGAATCCCGTTATCAAATCTTCAAGGCATGCATGAGGAAGTCACCTGTCTCAAAAGAGGTTGATTTGGGAGCACTAGCTAAGTATACTCAAGGCTTTAGTGGTGCTGACATAACAGAAATATGCCAGCGGGCATGCAAATACGCTATTAGAGAAGACATAGAAAAGGACATAGAGCAGGAGAAGAAGAGAAGAGAAAACCCTGAGACCATGGTTGAAGACAATGAAGAAGATGTTGCCGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCTCGTAGGAGTGTTAGTGATGCTGATATACGTAAATACCAGGCATTTGCTCAGACCTTACAACAATCCCGTGGCTTTGGAAGTGATTTTAGGTTTCCAGAGACTGGTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGGGCTGAAGAAGATGATCTGTATAGTTAG 2403 0.4324 MSHHAESSDSNPEKKDFSTAILERKKSPNRLVIDEAVTDDNSVVSMHPETMEKNKLFHGDAILIKGKKRRDTICIVLADEKCEEAKLRMNKVVRWNLRVRLGDVVSVYCSEVPYGKRVSVLPIDDTIEGLTGNLFDSYLKPYFFEAYRPLRKGDLFLVRGGMRSVEFKVIETDPGECCLVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNLKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMVVSNEHFLTSLGTSNPSALRETVIEVPNVSWADIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAIQRGSKVGHGGEAADRVLNQLLTEMDGMSVKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKEVDLGALAKYTQGFSGADITEICQRACKYAIREDIEKDIEQEKKRRENPETMVEDNEEDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSDFRFPETGGSDPFATSAAGAEEDDLYS* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0760 800 Pfam AAA+ lid domain 396 438 IPR041569 -
Vra2g0760 800 Pfam AAA+ lid domain 673 713 IPR041569 -
Vra2g0760 800 Gene3D - 209 373 IPR027417 -
Vra2g0760 800 SMART CDC48_N_2 30 112 IPR003338 -
Vra2g0760 800 ProSitePatterns AAA-protein family signature. 620 638 IPR003960 GO:0005524|GO:0016887
Vra2g0760 800 Gene3D - 7 111 - -
Vra2g0760 800 MobiDBLite consensus disorder prediction 771 800 - -
Vra2g0760 800 PANTHER AAA-FAMILY ATPASE 5 779 - -
Vra2g0760 800 Gene3D - 654 762 - -
Vra2g0760 800 Gene3D - 375 466 - -
Vra2g0760 800 CDD AAA 483 650 - -
Vra2g0760 800 CDD AAA 210 373 - -
Vra2g0760 800 SMART CDC48_2_2 129 195 IPR004201 -
Vra2g0760 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 763 IPR027417 -
Vra2g0760 800 Pfam ATPase family associated with various cellular activities (AAA) 517 650 IPR003959 GO:0005524|GO:0016887
Vra2g0760 800 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
Vra2g0760 800 Gene3D - 112 208 - -
Vra2g0760 800 Pfam Cell division protein 48 (CDC48), domain 2 130 194 IPR004201 -
Vra2g0760 800 Gene3D - 467 650 IPR027417 -
Vra2g0760 800 SUPERFAMILY ADC-like 26 108 IPR009010 -
Vra2g0760 800 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 779 - -
Vra2g0760 800 SUPERFAMILY Cdc48 domain 2-like 112 203 IPR029067 -
Vra2g0760 800 SMART AAA_5 240 376 IPR003593 -
Vra2g0760 800 SMART AAA_5 513 652 IPR003593 -
Vra2g0760 800 ProSitePatterns AAA-protein family signature. 344 362 IPR003960 GO:0005524|GO:0016887
Vra2g0760 800 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 108 IPR003338 -
Vra2g0760 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 465 IPR027417 -
Vra2g0760 800 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 34 766 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0760 Vra-Chr2 6734811 6738763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0760 509 708 Calmodulin-binding Proteins AT3G56690 42.786 3.02e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0760 K13525 - tcc:18590940 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0760 2 6734811 6738763 Vra2g0760 2 6734811 6738763 ECH