Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0757 ATGGGTGATATTGAGGGATCTCCGGGAAGCTCCATGCATGGAGTGACAGGGAGGGAACAAACCTTCATTGCCTCAGTGGCTTCCCCTATGGTCCCAACTGACACAACGGCAAATTTTGCTTTGCCAGTTGATTCTGAGCATAAAGCCAAGGTTTTTAAACTGTTTTCCCTGGCCAATCCCCATATGAGAACCTTCCACCTCTCTTGGATATCCTTCTTCACATGCTTTGTCTCAACCTTTGCAGCAGCCCCTCTTGTCCCCATCATTCGAGACAACCTCAACCTCACCAAGAGTGACATTGGGAATGCCGGGGTTGCTTCTGTCTCCGGCAGCATCTTCTCCAGGCTCACAATGGGTGCAGTTTGTGACCTCTTGGGCCCTCGTTATGGCTGTGCCTTCCTCATCATGCTTTCTGCCCCAACTGTCTTCTGCATGTCGTTTGTGGATGATGCTGCAGGATATATAGCAGTGAGGTTCATGATTGGGTTCTCCTTGGCCACTTTTGTGTCATGTCAGTACTGGATGAGTACCATGTTCAACAGTAAGATTATTGGGCTTGTGAATGGGACTGCTGCAGGGTGGGGAAACATGGGCGGTGGAGCCACTCAGCTCATAATGCCCTTGGTCTATGAATTGATCAGAAGAGCTGGAGCTACTCCCTTCACTGCCTGGAGAATTGCCTTCTTCATTCCAGGTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACCCTAGGCCAAGATTTGCCTGATGGCAACCTTGGTACCTTGCAGAAGAAGGGTGATGTTGCCAAAGACAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATTTTTGCCCTCCTCTATGGGTACTCTATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTGAAGCTACACACTGCTGGAATCATCGCTGCTTCATTTGGAATGGCAAATCTCCTGGCTCGTCCCTTTGGTGGATACACTTCTGATGTTGCAGCCAGGTTGTTCGGCATGAGGGGCAGGCTTTGGACCCTGTGGGTCCTCCAAACCTTAGGAGGTGTTTTCTGCATATGGCTTGGTCGTGCCAACTCACTTCCCATTGCAGTCTTGGCTATGATCCTCTTCTCTATTGGCGCTCAAGCTGCATGTGGTGCAACTTTTGGCATCATTCCTTTCATCTCAAGGCGTTCTCTGGGGATCATATCCGGTCTAACTGGTGCAGGTGGCAACTTTGGCTCTGGTTTGACCCAGTTGATCTTCTTTTCAACCTCAAAGTTTTCTACATCCACTGGTCTCTCCTTGATGGGAATCATGATTGTGTGTTGTACTCTTCCTGTGACTCTTGTTCACTTCCCCCAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAAGACATCAATAAGTCAACTGAAGAATATTATTACACTTCTGAATGGAATGAGGAAGAGAAGCAAAAGGGTTTGCACCAGAATAGTCTGAAATTTGCTGAGAATAGCCGTTCAGAAAGAGGTAAGCGTGTGGCCTCAGCCCCCACACCACCAAACACAACCCCAACCCATATCTAG 1593 0.4802 MGDIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVDDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGTLQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWTLWVLQTLGGVFCIWLGRANSLPIAVLAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSTGLSLMGIMIVCCTLPVTLVHFPQWGSMFLPPSKDINKSTEEYYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASAPTPPNTTPTHI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0757 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vra2g0757 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vra2g0757 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vra2g0757 530 MobiDBLite consensus disorder prediction 491 530 - -
Vra2g0757 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Vra2g0757 530 Coils Coil 530 530 - -
Vra2g0757 530 MobiDBLite consensus disorder prediction 491 513 - -
Vra2g0757 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Vra2g0757 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Vra2g0757 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Vra2g0757 530 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0757 Vra-Chr2 6722909 6726174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0757 1 530 Inorganic Solute Cotransporters AT5G60770 80.566 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0757 K02575 - gmx:100807710 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0757 2 6722909 6726174 Vra2g0757 2 6722909 6726174 ECH
Vra4g0349 4 6329179 6331288 Vra2g0757 2 6722909 6726174 PCT