LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0749	ATGGCTTCTACAACCCCAGTTCCTGTTAAAGCCAGCAACACAAAGCTACCACCTCTAAGGGCAAAGAAAGATCGGCACACGAAGGTGAATGGCAGAGAAAGGCGTGTTCTTTTGCCACCTTTGTGTGCTGCTCGCATCTTCCAACTCACTCGTGAGCTAGGTTACAAGACTCATGGAGAGACCATAGGCTGGCTTCTGCGCCAGGCTGAACCCTCCATTATTTCTGCCACTGGCACTGGTATATCACCTTCCGTCGTTGATTTAACGTCATCGTCATCATCACCGTCACCATCTTCTTCCTCACCACCAATACTTCCACTACCTTCTGAAGACAACAACGCTGTTGTTGCTCAACATGCAAATTCGCCACACGTGTTAGACAATGAGATCAATTCTAAAGAGACATTTCTGCCATTGGATTTTGATGTGTTTTCAAACTTTAATGTTGAGTTTTCTGCTGCTGAGATTGAAATGCTCCAATCATTGATGACCAGGTTGGGCTGA	504	0.4603	MASTTPVPVKASNTKLPPLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTHGETIGWLLRQAEPSIISATGTGISPSVVDLTSSSSSPSPSSSSPPILPLPSEDNNAVVAQHANSPHVLDNEINSKETFLPLDFDVFSNFNVEFSAAEIEMLQSLMTRLG*	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g0749	167	PANTHER	TRANSCRIPTION FACTOR TCP4-RELATED	11	164	IPR005333	GO:0003700
	Vra2g0749	167	MobiDBLite	consensus disorder prediction	1	30	-	-
	Vra2g0749	167	Pfam	TCP family transcription factor	21	118	IPR017887	-
	Vra2g0749	167	PANTHER	TRANSCRIPTION FACTOR PCF1-LIKE	11	164	-	-
	Vra2g0749	167	MobiDBLite	consensus disorder prediction	85	110	-	-
	Vra2g0749	167	ProSiteProfiles	TCP domain profile.	22	76	IPR017887	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0749	Vra-Chr2	6579858	6580361	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g0749	15	95	TCP Transcription Factor Family	AT5G08330	63.415	6.37e-29	105

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TCP	Vra2g0749		TCP	6.8e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0749	-		K16221	var:108322003	277.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra4g0348	4	6288644	6289147	Vra2g0749	2	6579858	6580361	PCT