Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0745 ATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGAGGGACAAATTGAGGATCCAAAACAGTTCCCACCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGATGCCCTTTATTCATCGGATATGATATCTTTTTCCACTCAAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCACGCCACTTGGGAGCTAATTGGATGGTGAATTACAACGAAAGCAACCCCAACACCAACAATACCACCTTCTTCTCTTCCGAGCTTAATAACAATGCTTCTGGTGAAATAGCCAATAGAGAAATTCAGAAGCAGTTCGGTGAAATGCATTACCCTCCTTCTTCGTCTTCTTCGCCTCCTCTTTACCATAATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCTGAGCCTGTGCTTCATTATCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAGTAGCGGGATGGGTTTCAAGAAGAATAATGAACAAGACATAAATCCTCATCAGGGTTTATCACTGTCACTTTCCTCGAACTCACAATCTAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACTCAATATTCAAAGTCATTGAAGTCCTCCATGAAGTTGAACGTTCTTTCAAACAATACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCGAGATTCTTGAAGCCGTGCCAACAGCTGTTAGATGAGTGGTGCTGTCAATACGGTTCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCCTCTATTTCTGCAGCTGCAACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGGGGTTGCTGCAAAAGGTGTTAGCTATCTGGGTGCTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGCTAATACAAATAGCGCTGATGGCGGAGCCACGAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAATAAGGCCAAACTACTGTACATGCAGGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCGTTCGAGTCTGTTGCTGGTCTTAGTTCTGCAACTCCTTATGTCTCCTTGGCTCTCAAGTCAGTATCGAAACACTTCAGATGCTTAAAAAGTGCTATCTCTGATCGACTGAAGCTTACATGTGAAGTCTTGGGAGAGGAATTTTCAATGCCAACCACAAGTAATGGTGGTAAATTTGACAGTAACATGGCAAGGCTAAGGTGCATAGATCAAAGTTTTCAGAAAAACAAATCTTTGGGGGCGAACATAAACTTTCTTGAGCCCCAACAACACGTGTGGAGGCCCCAGAGAGGCTTGCCAGAAAGATCAGTTGCAATTCTTAAAGCTTGGCTCTTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAAGCCCACCAAGCCTCTAATAAAAGTGACCAGGTAGCTTCTGCATCTGAAGGTAGCAACCGGCCCAAATCAGATCACCAACCTGTGAGCAGGTATGGCACGCATGCATCATCACATGCAATCCCTGACAAGCAGTTTCAGTGTTTGGAAATGGGGTCATCATCCTCAGCAGGCAATGAGGAACACATTGGGATGAATGAAGACCAATGGAATCAAGAGAAGAGATCAAAACTGGAATGCCAGATTGCTGCCACACCAAACATGGATGGGACAGTGATGGGGTTTATGCCCTACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGTTCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTGCAACAGCAACAACTGCAGCAAGAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2223 0.4521 MSSLRPELHVAQQLRRDKLRIQNSSHQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDDALYSSDMISFSTQRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPRHLGANWMVNYNESNPNTNNTTFFSSELNNNASGEIANREIQKQFGEMHYPPSSSSSPPLYHNALQDMSYGVWGGNHAEPVLHYQANNELRFGGANLWTNSSGMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSLKSSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVPEWVSRDVSAASISAAATAGDALNVDESGVAAKGVSYLGASSSVLYSSNENANTNSADGGATSNFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKSAISDRLKLTCEVLGEEFSMPTTSNGGKFDSNMARLRCIDQSFQKNKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEAHQASNKSDQVASASEGSNRPKSDHQPVSRYGTHASSHAIPDKQFQCLEMGSSSSAGNEEHIGMNEDQWNQEKRSKLECQIAATPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEELRRQFGGHMIHDFVG* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0745 740 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 712 - -
Vra2g0745 740 Gene3D - 520 582 - -
Vra2g0745 740 Pfam Homeobox KN domain 534 573 IPR008422 GO:0003677|GO:0006355
Vra2g0745 740 MobiDBLite consensus disorder prediction 589 628 - -
Vra2g0745 740 CDD homeodomain 517 578 IPR001356 GO:0003677
Vra2g0745 740 SUPERFAMILY Homeodomain-like 519 583 IPR009057 -
Vra2g0745 740 ProSiteProfiles 'Homeobox' domain profile. 514 577 IPR001356 GO:0003677
Vra2g0745 740 SMART HOX_1 517 581 IPR001356 GO:0003677
Vra2g0745 740 MobiDBLite consensus disorder prediction 591 625 - -
Vra2g0745 740 MobiDBLite consensus disorder prediction 215 255 - -
Vra2g0745 740 SMART prehox3 283 459 IPR006563 -
Vra2g0745 740 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 32 712 - -
Vra2g0745 740 Pfam Associated with HOX 288 458 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0745 Vra-Chr2 6539859 6546990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0745 372 586 Homeobox Transcription Factor Family AT4G34610 52.093 3.78e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra2g0745 POX 6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0745 - - gmx:100793050 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0344 4 6236713 6243585 Vra2g0745 2 6539859 6546990 PCT