Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0740 ATGAAGCCACAGCTCAAAATTGCTCTTGCTCTAGTTATTAGCTTGCTTTGGATTCAGAGCTCATTTTGTGGTGACGCTTCTGATAACCTAAACAAGTGGAGATGTAGATGTTCTTTTGAAGGGAATCGGAGCTTCTCTCTGGCTAATTGTTCTAAGTCATGTGATTGCCACTCAGATGCTGAAGAAAGTGCATCCGTATGGAAGTGCATATGCGATTCAAATGGGTTTCCCCAAGTGGCAGCAGATGGTCATAGTCCTAATTGTTTTAAAGCTTGCAACTGCACCTGGGGAACTGTCAGAAATCGGGGAGGTTCAAAGAAACGTGTTTCCATCAAGATTGTTGTAGTTATCCTATTAATATGTGTTATATGCACAACCATGGCGTTTCTTGTCTCGCTCTTATGCCATGTATACAGAAGGGACAGGTGTACTGTTCAATCACCCATATTCTCAACATATAAGGAAACAAGTAGTGGTAGTACCACCAACTTAATTAGTCATAGGTCAGGGGCTTCCTCAGTGCCAGAAACAAAATTTGCTATAAATTCTCCAATTTGTCATATTACAGGATGTTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTACCATGGAAATATTTTTCCATTTTCCTTAGCTGAACTGGAAAATGCCACTGAAAACTTTTCATCTTCCAACCTGATTGGACTAGGCGGAAGCAGTTATGTATACCATGGTCGGCTGAAAGATGGTAGCGATGTGGCGGTTAAACGACTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATACTGTTCAGAGTTAAAAGGAAAACATGTTCAGAGGTTACTTGTATTTGATTACATGGCTAATGGAAATTTGAGGGACTGTTTAGATGGAATTTCTGGAAAACATATAGATTGGGCTACTCGTGTAATGATTGCGTTAGGAGCTGCAAAGGGCTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACCTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGTACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGATGTCTTTAGTTTTGGTGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAGCCCATCCATAAATCAACTGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTACAGGATAGTAGGCGAGTAATAATGGAACTGGTTGATCCACAATTAAAAGGAAACTTTCCAGAAGAAGAGGTGCAGGTGATGGCATACTTAGCAAAGGAGTGTTTGCTGCTAGATCCTGACACTCGACCAACCATGAGTGAGGTTGTTCAGATTCTTTTAAGTATTTCCCCAGGAAAATCTAGGAGGAGAAGAAACATTACAGGCAGCCTCTTTCAGGAACCGCAGGATGAAGAAAAGCAAAGGCAAGCCACACCCAGTAAATTTCCAACGCATAGTTCACTGCCAATATATCTTGATCATAATCATTCAGTTAAGAACAAAACTAAAGAAGCAGATCCAGTTTCAGCTGAGTATATGGAGAGTTTGATCATCTTGGCTTCAAAATCTGATGGCTCTTGTGTATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTAGGTTTGAATCCTTTTGCATCACCTCTGGCAAAGCTCCTTGA 1833 0.4124 MKPQLKIALALVISLLWIQSSFCGDASDNLNKWRCRCSFEGNRSFSLANCSKSCDCHSDAEESASVWKCICDSNGFPQVAADGHSPNCFKACNCTWGTVRNRGGSKKRVSIKIVVVILLICVICTTMAFLVSLLCHVYRRDRCTVQSPIFSTYKETSSGSTTNLISHRSGASSVPETKFAINSPICHITGCFQKASFLFGSPKETYHGNIFPFSLAELENATENFSSSNLIGLGGSSYVYHGRLKDGSDVAVKRLKDQGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGISGKHIDWATRVMIALGAAKGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWATPRLQDSRRVIMELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILLSISPGKSRRRRNITGSLFQEPQDEEKQRQATPSKFPTHSSLPIYLDHNHSVKNKTKEADPVSAEYMESLIILASKSDGSCVSEEEMVDLTEPRFESFCITSGKAP* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0740 610 MobiDBLite consensus disorder prediction 520 553 - -
Vra2g0740 610 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 604 - -
Vra2g0740 610 SMART serkin_6 225 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0740 610 Gene3D Phosphorylase Kinase; domain 1 200 305 - -
Vra2g0740 610 CDD STKc_IRAK 231 507 - -
Vra2g0740 610 PANTHER OS01G0253100 PROTEIN 2 604 IPR045271 GO:0004714|GO:0006468
Vra2g0740 610 Gene3D Transferase(Phosphotransferase) domain 1 306 524 - -
Vra2g0740 610 SUPERFAMILY Protein kinase-like (PK-like) 205 504 IPR011009 -
Vra2g0740 610 Pfam Protein kinase domain 227 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0740 610 ProSiteProfiles Protein kinase domain profile. 225 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0740 610 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Vra2g0740 610 MobiDBLite consensus disorder prediction 537 551 - -
Vra2g0740 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0740 Vra-Chr2 6409287 6416822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0740 1 608 Receptor kinase-like Gene Family AT2G28250 51.387 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vra2g0740 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0740 - - gmx:100817870 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0740 2 6409287 6416822 Vra2g0740 2 6409287 6416822 ECH
Vra4g0334 4 6070049 6075342 Vra2g0740 2 6409287 6416822 PCT