Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0736 ATGGCTTCTGATTGCTCAAGATTTGTAAGATTTCAAGATGACCCTGAATTGGTAAAATTGCCGACTGCAAATAGTGGCAAGGGAATCAGGAGCAATGGAACACGGTTAGCTGAGATAAGGGGTAAAAAGGGTCTGAAGGAAACAAGGAAGTTCTTGAAGGCTAGAGTATTGTCAAGAGTATTCTCAGAGGATTACGAGAGAGTTAGAAAAAAAACACTATTAGATCCCCGGGGACAAAACATTCACCGATGGAACAAAATCTTCTTGGTAGCATGTCTAGTTTCTTTGTTTGTAGACCCTCTGTTCTTTTATTTGCCACTAGTTCGAGATGAAGTGTGCATTGATATTGGAACAGCACTTGAAGTTTTCCTCACAATGATAAGATCAATGGCAGATGTGTTTTACATGATTCAGATTCTCATGAAGTTTCGAACAGCTTATGTTGCTCCTTCTTCTCGGGTATTTGGGAGGGGAGAACTTGTCATAGATACTACCAAGATAGCTACTAGGTACCTGAGAAAGGGTTTTGGTCTAGACTTCATTGCTGCATTGCCTCTTCCTCAGGTGTTAATTTGGATTGTGATCCCCAATCTCGGAGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGCTTTATCATCATTTTCCAATATTTACCAAGGTTGTTTCTGATTTTTCCACTTTCATCCCAAATTGTACAAGCTACGGGAGTTGTGACAGAAACAGCATGGGCAGGGGCTGTTTACAACTTGGTTCTGTACATGTTGGCTAGCCATGTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCCTGCTGGAGGAGTGTCTGTGATATGGAGCAATCTTGCCAATATGGATTCTTTGACTGCAAAAGGGTTGATGACTCCTTCAGGGTCTCCTGGTTTATAGCAAGTAATATCACAGTTTTATGCTCGCCAAAGGCTAACTTCTATCATTTTGGTATATACGGTGATGCTGTGACATCCCAAGTTACCACCTCATCATTCTTTCACAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATCTAAGTTCATTGGGACAAGGTCTTCTTACCAGCACTTTTGTTGGAGAAATAATGTTTGCCATTGTTGTTGCAACCCTTGGACTGGTTCTTTTTGCATTGCTTATTGGCAATATGCAGACATATCTCCAATCAACAACTGTTCGCTTAGAAGAGTGGAGGGTGAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTACCACCAGAACTTAGACAATCTGTGCGCAAATATAACCAATATAAATGGCTAGCCACACGAGGGGTAGACGAAGAAGCTCTTCTCAAAGGACTTCCTGCTGATCTTCGGAGAGACATCAAGCGCCACCTTTGTCTCGAACTAGTTCGACGTGTGCCATTGTTCGATCAAATGGACGAGAGAATGCTTGACGCAATATGCGAGAGGCTGAAGCCGGCGCTGTACACGGAGAACACGTACCTAGTTCGGGAGGGCGATCCCGTGAACGAAACTCTCTTCATAATCAGAGGCCACCTGGATTCTTACACCACGAACGGAGGCCGCACTGGTTTCTTCAACTCGTGCCGCATCGGGCCCGGCGATTTCTGCGGCGAGGAGCTGTTGACATGGGCCCTGGGCCCACGGCCGAGCTTCATCCTGCCGTCCTCGACTCGAACCGTGAAGGCGATCTCGGAAGTGGAGGCCTTCGCCCTGATAGCAGAAGACCTAAAGTTCGTGGCGTCACAGTTCAGAAGACTACACAGCAAACAACTGAGACACAAGTTGAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCGTGTTTCATACAAGCTGCATGGAGACGGTATAAGAAGCGAAAGGAAGTAGCAGAAGTGAGAGCTTTGAGGTACTACGTTGAGTCGAAGAGTGAGACAGTAGGGTTGGTTGTGTATGGTACGAGGATGACTAGGAAAGCTACTCTGCATTCTGATGAAGTTGTCAACGCTTTGCAGAAGCCAGAAGAACCAGATTTTTCTGTGGGTGAGTGA 2055 0.4545 MASDCSRFVRFQDDPELVKLPTANSGKGIRSNGTRLAEIRGKKGLKETRKFLKARVLSRVFSEDYERVRKKTLLDPRGQNIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGTALEVFLTMIRSMADVFYMIQILMKFRTAYVAPSSRVFGRGELVIDTTKIATRYLRKGFGLDFIAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIVQATGVVTETAWAGAVYNLVLYMLASHVLGASWYLLSIERQEACWRSVCDMEQSCQYGFFDCKRVDDSFRVSWFIASNITVLCSPKANFYHFGIYGDAVTSQVTTSSFFHKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALYTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALGPRPSFILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKLRFYSHQWRTWAACFIQAAWRRYKKRKEVAEVRALRYYVESKSETVGLVVYGTRMTRKATLHSDEVVNALQKPEEPDFSVGE* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0736 684 PANTHER - 32 683 - -
Vra2g0736 684 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra2g0736 684 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra2g0736 684 PRINTS EAG/ELK/ERG potassium channel family signature 344 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra2g0736 684 PRINTS EAG/ELK/ERG potassium channel family signature 370 381 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra2g0736 684 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra2g0736 684 PRINTS EAG/ELK/ERG potassium channel family signature 438 445 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra2g0736 684 SUPERFAMILY Voltage-gated potassium channels 76 397 - -
Vra2g0736 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 683 - -
Vra2g0736 684 SUPERFAMILY cAMP-binding domain-like 405 602 IPR018490 -
Vra2g0736 684 SMART cnmp_10 475 606 IPR000595 -
Vra2g0736 684 Gene3D Helix hairpin bin 402 466 - -
Vra2g0736 684 CDD CAP_ED 475 606 IPR000595 -
Vra2g0736 684 ProSiteProfiles cAMP/cGMP binding motif profile. 475 572 IPR000595 -
Vra2g0736 684 ProSiteProfiles IQ motif profile. 611 639 IPR000048 GO:0005515
Vra2g0736 684 Gene3D - 86 399 - -
Vra2g0736 684 Gene3D Jelly Rolls 473 593 IPR014710 -
Vra2g0736 684 Pfam Ion transport protein 84 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0736 Vra-Chr2 6353960 6358545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0736 50 681 Ion Channels AT2G28260 76.498 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0736 K05391 - gmx:100791992 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0736 2 6353960 6358545 Vra2g0736 2 6353960 6358545 ECH
Vra4g0333 4 6063581 6067154 Vra2g0736 2 6353960 6358545 PCT