Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0730 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCCAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCAGAGCACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAGGCGGTAAAGTTCATGGCGGACCCAGAAACCGACGAGGTTTTTGCCAAACTGAGTCTGGTTCCTCTCAGAAACTCGGAACTCGGTCCGGACGCGGAGGGGGGTGCTGACATGGCGGAGGCTTCGGAGAAGCCCGCGTCTTTCGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCAGGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATTGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGTTTAAGGAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGAATTTGAGTGGCAGGGCGAAAGTGAGGCCTGAGGCTGTTGTTGAAGCAGTGACACTGGCTGCTGCTAACAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTAAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGAATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAACTGGTGTCAAACTTGCCAGTGATCAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGCAACCAGCTCGGACCTAACCACCCCTTGTGTGGTTTTTCAGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCGGATCTCCACCTTAACAGTAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCAGCAACATGGACTGTATAGTGGGATTTCAAGTGGTAACACGACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCATTGGGAAATCTAGCAAGACTTTGGAGAAATCTGATGATGATAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTTACTGAACAACAGATTTCTAGAGATGTGTTGTCCCGTGGGAAAAAATCAGCGGATGATGTCAAAGACAAGGAGAAGTGCTTTCTGGATGACTCCCAATCATCAGGAAAAGCTTCCTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCACGGCTTGGTTCTTATGAAGAACTCTATAGAAGACTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTACGTGTTCTACTATGATGCAAAAGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGACTTCATGAAAACAGCGAAAAGGTTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTACAAGGGCCTTTATTACAGGAACTAGGAATGGTGAACATGGACTGGATGCATCAAACAAAACAGGCCCTCTGAGCATATTTGCTTAA 2082 0.4928 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSELGPDAEGGADMAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGFEVWNSASGSGSGSIGGSGNCGIGPYGPFSFFLREENKSLRNGGGGGGGGGGNLSGRAKVRPEAVVEAVTLAAANKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPPFSGNQLGPNHPLCGFSDNAPAGIQGARHAQIGTSLSDLHLNSKLQLGLLPSNIQQHGLYSGISSGNTTNHDKSKESLSHLLTIGKSSKTLEKSDDDKKHQFLLFGQPILTEQQISRDVLSRGKKSADDVKDKEKCFLDDSQSSGKASSAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEIPNYVFYYDAKGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVTRAFITGTRNGEHGLDASNKTGPLSIFA* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0730 693 Gene3D - 103 207 IPR015300 -
Vra2g0730 693 ProSiteProfiles PB1 domain profile. 581 661 IPR000270 GO:0005515
Vra2g0730 693 SMART B3_2 105 207 IPR003340 GO:0003677
Vra2g0730 693 SUPERFAMILY DNA-binding pseudobarrel domain 99 206 IPR015300 -
Vra2g0730 693 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Vra2g0730 693 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Vra2g0730 693 PANTHER AUXIN RESPONSE FACTOR 2 670 - -
Vra2g0730 693 Gene3D - 317 389 - -
Vra2g0730 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra2g0730 693 CDD B3_DNA 104 205 IPR003340 GO:0003677
Vra2g0730 693 Gene3D - 580 666 - -
Vra2g0730 693 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0730 Vra-Chr2 6268287 6271161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0730 1 666 B3 DNA Binding Superfamily AT4G30080 57.184 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra2g0730 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0730 - - gmx:100814686 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0730 2 6268287 6271161 Vra2g0730 2 6268287 6271161 ECH
Vra4g0327 4 5991480 5994663 Vra2g0730 2 6268287 6271161 ECH
Vra4g0327 4 5991480 5994663 Vra2g0730 2 6268287 6271161 PCT