Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0722 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGAATACTCTGCAAAAGACTATCATGATCCTCCGCCAGCACCCTTGTTCGATCCCGAAGAGCTCACACAGTGGTCCTTCTATAGAGCCCTTATCGCTGAGTTCATAGCAACCCTTCTCTTCCTCTATGTCACTGTCCTCACCATAATTGGCTACAAAAGACAGACTGATACCAACGTTGGTGGCACCGAATGTGACGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACTGCTGGTATTTCAGGAGGACACATAAACCCAGCAGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATTGTAGCACAGTGTGCCGGTGCTATATCTGGCACTGGACTGGCGAAGGGGTTCCAAAAGGCGTACTACAACAGGTATGGAGGTGGTGCTAACTCTGTTGCTGATGGGTACAACAAGGGCACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTACTAGCACCACTCCCTATTGGCTTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACGACAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCATTCAGGAGCAATGCTTAA 858 0.4883 MAKDVEVQEQGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDTNVGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAISGTGLAKGFQKAYYNRYGGGANSVADGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0722 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Vra2g0722 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Vra2g0722 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vra2g0722 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Vra2g0722 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0722 285 PANTHER AQUAPORIN PIP2-7 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0722 Vra-Chr2 6180357 6182031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0722 1 283 Major Intrinsic Protein MIP AT5G60660 80.919 4.19e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0722 K09872 - gmx:100811119 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0722 2 6180357 6182031 Vra2g0722 2 6180357 6182031 ECH
Vra4g0321 4 5896232 5897778 Vra2g0722 2 6180357 6182031 ECH
Vra3g0413 3 4752001 4754296 Vra2g0722 2 6180357 6182031 ECH
Vra4g0321 4 5896232 5897778 Vra2g0722 2 6180357 6182031 PCT