Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0721 ATGGCTGAAGATGTTGAGCAAGGAGAATACCCTGCAAAAGACTATTATGATCCTCCTCCAGCACCTTTCTTCGACCGCAAAGAGCTCACACAGTGGTCCTTCTATAGAGCCATTATCGCTGAGTTCATAGCAACCCTTCTCTTCCTCTATGTCACCGTCCTCACCATAATTGGCAACAAAAGACAGATTGATACCACCCAATGTGATGGGGTTGGCATTATCGGCGTCGCTTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACTGCCGGTATTTCAGGAGGACACATAAACCCAGCAGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTATACATTGTAGCACAGTGTGCTGGTGCTATCTGTGGCACTGGACTGGCGAAGGTGTTCCAAAAGACGTACTACAACAGGTATGGAGGTGGTGCTAACTTTGTTGCTGATGGCTGCAACAAGGGCACTGCTTTGGGTGCTGAGATTATTGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCTATATTCCTGTACTAGCACCACTCCCTATTGGCTTTGCTGTGTTCGTGGTTCATTTGGCTACAATCCCAGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACGAAAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTATACCACCAATACATCCTTAGAGCATCAGCTATCAAGTCTCTTGGATCATTCAGGAGCCATACTTAA 837 0.4743 MAEDVEQGEYPAKDYYDPPPAPFFDRKELTQWSFYRAIIAEFIATLLFLYVTVLTIIGNKRQIDTTQCDGVGIIGVAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGTGLAKVFQKTYYNRYGGGANFVADGCNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSYIPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIYNDEKIWDDQWIFWVGPIVGAAVAALYHQYILRASAIKSLGSFRSHT* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0721 278 Pfam Major intrinsic protein 28 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PANTHER AQUAPORIN PIP2-7 5 277 - -
Vra2g0721 278 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 Gene3D Glycerol uptake facilitator protein. 21 278 IPR023271 -
Vra2g0721 278 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Vra2g0721 278 TIGRFAM MIP: MIP family channel proteins 40 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 SUPERFAMILY Aquaporin-like 27 264 IPR023271 -
Vra2g0721 278 CDD MIP 36 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g0721 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 277 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0721 Vra-Chr2 6171144 6172463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0721 1 276 Major Intrinsic Protein MIP AT2G37170 77.580 2.70e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0721 K09872 - gmx:100811119 489.189