Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0715 ATGAGTACAGAGGAAAAGCCTGTGAATGAGGAAAATGAAGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAGCCTCGCATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCATCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTCAGTTCTCGCTCTGTTGATCCTCCTACACATAACTCTCCTGGGCCTTCCACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTCCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGCAGATGTTGGAAAGTCAAATACTGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCGTTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGACAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCTCGAGTAAAGGAAGGAGATGTATTGGTAGACACATCAACAAACGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCTCACCAAGAATGCGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAAGAGGAAGTTCGGAACCTACCTGTCACTCTATTAAGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAATAGGTCTCAGCTGGAAGATGCAAACGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTGGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGAGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCGTCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTATGGTGGTTCTCTTTGCGCATATTTTTTACTCCGTGGTTCGTGTGCAAGCTGTTTTGTCTATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGCAGTTCTATTCTCGTGGAGTTTTATAGATGGAGAAGAAGATTGCAGGCATCAGAACAGCGACAAGGCCCTCAATTGATGCCACAAACAGGACAAAATCCACAATCTTCAAACACTCCTAATTCAGATTCAGGTTCAGGTCCTTCAAATCACAGTCAACCTGTGGTGCAAAATGAACAGAACTCAAATCAGAGTTGA 1548 0.4315 MSTEEKPVNEENEAGSCRRTVSLPVQKVDDPMGITEEASHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSAIRSLLPKLSFRYRTPAADVGKSNTAAPEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRVKEGDVLVDTSTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMSTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFAMVVLFAHIFYSVVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQASEQRQGPQLMPQTGQNPQSSNTPNSDSGSGPSNHSQPVVQNEQNSNQS* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0715 515 MobiDBLite consensus disorder prediction 172 188 - -
Vra2g0715 515 MobiDBLite consensus disorder prediction 171 211 - -
Vra2g0715 515 SUPERFAMILY RING/U-box 260 315 - -
Vra2g0715 515 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Vra2g0715 515 MobiDBLite consensus disorder prediction 79 110 - -
Vra2g0715 515 MobiDBLite consensus disorder prediction 469 515 - -
Vra2g0715 515 SMART ringv_2 263 312 IPR011016 GO:0008270
Vra2g0715 515 MobiDBLite consensus disorder prediction 1 110 - -
Vra2g0715 515 CDD RING_CH-C4HC3_MARCH 264 312 - -
Vra2g0715 515 MobiDBLite consensus disorder prediction 53 71 - -
Vra2g0715 515 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 27 486 - -
Vra2g0715 515 PANTHER OS02G0165000 PROTEIN 27 486 - -
Vra2g0715 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Vra2g0715 515 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0715 Vra-Chr2 6136580 6141031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0715 261 367 C3H Transcription Factor Family AT2G37950 35.965 3.02e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0715 - - gmx:100815566 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0715 2 6136580 6141031 Vra2g0715 2 6136580 6141031 ECH
Vra4g0315 4 5856109 5860152 Vra2g0715 2 6136580 6141031 PCT