Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0708 ATGGCTTCCTCCAACACTCCCAAATCCCATAAATCTCCCAAAACCAAGAAAGGAGAAATCTCCACAACCCAAAATAAAGCTAAGGAGAAAAATCGAGACATCAGCAAAGAGGAGAACCAAAAGAAGAAGAATAAGAAGCCCAAGCTCAGCAACGGCAATTCCAAACACCCACATGAAAAGGGCGCAGAAGGAAGCGGCGAAGATGGGAAAGCCAACGTGTTTCCCATGAATCGTATCAGGACCATGATTAAGGGCGAAGATCCTGATATGCGTGTTTCGCAGGAAGCGGTGTTAGCCATCAACAAAGCTGTGTTTCTTGAGCAATTCACGCAGGATGCTTATTCTTGTTGTGTCCAGGACCGCAAGAAATGTCTGAGTTACAAGCACGTTGCAAATGTTGTTAGTAAGAAGAGGAGATACGACTTTCTTTCCGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCACTAAGAGAGAGAGATGCAGCAGGCAATGGAGTATTTCAGAAAATCTAA 516 0.4419 MASSNTPKSHKSPKTKKGEISTTQNKAKEKNRDISKEENQKKKNKKPKLSNGNSKHPHEKGAEGSGEDGKANVFPMNRIRTMIKGEDPDMRVSQEAVLAINKAVFLEQFTQDAYSCCVQDRKKCLSYKHVANVVSKKRRYDFLSDFVPEKVKAEDALRERDAAGNGVFQKI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0708 171 Gene3D Histone, subunit A 9 149 IPR009072 GO:0046982
Vra2g0708 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 134 IPR003958 -
Vra2g0708 171 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 164 - -
Vra2g0708 171 MobiDBLite consensus disorder prediction 1 74 - -
Vra2g0708 171 MobiDBLite consensus disorder prediction 12 45 - -
Vra2g0708 171 Coils Coil 20 45 - -
Vra2g0708 171 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 9 164 - -
Vra2g0708 171 MobiDBLite consensus disorder prediction 52 66 - -
Vra2g0708 171 SUPERFAMILY Histone-fold 74 148 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0708 63 130 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.429 3.90e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0708 - K03506 gmx:100793738 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0708 2 6025973 6029684 Vra2g0708 2 6025973 6029684 ECH