Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0696 ATGATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCCAGCTCAAACCCTAATAATAACAATCCTAATCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTGTCACCTAAGTCCCTCATGGCCACCAACCGTTTCATATGTGAAATTTGCAGCAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTCCATAGACGCGGCCACAACCTCCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGATCCCTCAAGAGCCTTGGGAGACTTGACTGGCATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTCTGCGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCGGCAGCTTTAAGCAACTTGAGAAATGATAATCATTTGACCAATGCTCCAGCTTCGAGGATCCCTCAGATTTTTTCAGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAATCGTTGGTGAATTATGCTGAGGCAAACCATCATCATCATCATCATCAACAGCAACAACAGCAGCAGCTGCTGCAGCAGCAAAAGATAAGGTTACCACTCTGGCTAGATCAGCAGGCGAATTCACAAGTACTTCACCACCCCCTTATTAACTTCCAAACCAAACCAAGTGATTTCAGTTCTTCGGGGCCAAACCCCGTGCCTGATGTGGTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGATGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAGGAACAAGAAGAAAACAAAGGAGAGTTGTCGCATAGCGCAAGCTCGAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACAGTGTTGCAGAAAACTGTTCAAATGGGATCTACTAGGGTGAACGACAACGCGTTTTGCTCCACGGGCAGCAATAGGAACGGAAACCACAACAATGTTGTGAACAACGTTGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGTGGGTATTTATTGAATGGTGACTCAAACAACTCGTTTTTGGTTGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCAGCATCAATTATGGGAAAACAATTACACTCCATAAGCTCACACGGCAAAAATCAACTCGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAACAACATTGAATCAATAAGGAGACCTTTTTTCGAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGGCTCAGGCATGAACCTGCAGAGCCAGTACGGTGGACACTATGTCTAG 1647 0.4669 MMSEESFSVPPNTVRDSLVHVQPPSSNPNNNNPNPSSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDNHLTNAPASRIPQIFSGFHSDQFGGSGTSESLVNYAEANHHHHHHQQQQQQQLLQQQKIRLPLWLDQQANSQVLHHPLINFQTKPSDFSSSGPNPVPDVVQTMDMFGPQFVNYRYPDASFGGANLSVLPPHGLKQEQEENKGELSHSASSNLYLSSNQNPPHYMSATTVLQKTVQMGSTRVNDNAFCSTGSNRNGNHNNVVNNVVVEVQKLDELVSVEGCTNLGGGGGGYLLNGDSNNSFLVVNGTKGLEHMVMPVDEETTAASIMGKQLHSISSHGKNQLGLTRDFLGVGDNNIESIRRPFFEQDLVEFNAMGSGSGMNLQSQYGGHYV* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0696 548 Gene3D Classic Zinc Finger 49 122 - -
Vra2g0696 548 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 513 - -
Vra2g0696 548 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 26 513 - -
Vra2g0696 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vra2g0696 548 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vra2g0696 548 Gene3D Classic Zinc Finger 123 204 - -
Vra2g0696 548 SMART c2h2final6 70 92 IPR013087 -
Vra2g0696 548 SMART c2h2final6 147 167 IPR013087 -
Vra2g0696 548 SMART c2h2final6 112 142 IPR013087 -
Vra2g0696 548 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Vra2g0696 548 MobiDBLite consensus disorder prediction 1 43 - -
Vra2g0696 548 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0696 Vra-Chr2 5933032 5936143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0696 40 217 IDZ Gene Family AT3G45260 84.831 3.34e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0696 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0696 K25870 - gmx:100817691 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0696 2 5933032 5936143 Vra2g0696 2 5933032 5936143 ECH
Vra4g0308 4 5774785 5777496 Vra2g0696 2 5933032 5936143 PCT