Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0688 ATGGGAAAGAAGCAGAAAGTCGTTCTTCCGCCGGACCTCCCCCCTGAGGTTCCAGATGACGAAGTTGAGGTTTCCGACGAAGACCTCCAATTCATCAAAGAGAATCGCAACTATGCCTCCTTACTCTCCACCCTGGACACCCATTCAATCACCAAGCATGTTACGCGGGTTGCTGATGCCAAAGACGATGCATTGGAGAAACTTTATGAGAAACGCATGCAAAAAAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAGACATTGGATGGAAAACTCCATTACCGGACAGCTTCAAAAGCCGTATCAGAAAATGATCTAAGTGAAGAGGGAACTGCAGAGGATGCCAATGCGGATGAAGGTATGGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTTAAGAAAATGAAGAAAGAGGCCAAAAAACAAGGGAAAGAAGTGGCTAAAGCAGAAGTGGAAGAGACACCACACGCAGCAGTGCTGGCTGAGGTAAAGGAAGATCTTACAGCTGAGCAGACATTTGAAAGTAAGAAGTGTAAACTTGCAGAATTGGGGAATGCCTTACTTACAGATCCAGAGTCCAACATTAAATTACTGAAAGAGATGGTGCAACTATCTAAAGATAACGATCATACCATTGTTAAGCTTGGACTTCTATCCCTCTTGGCAGTTTTCAAAGATATTGTCCCTGGTTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAAATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAGTCTACTCTTCTTTCAGCATACAAGGCATATTTGCAAAGGCTGGTAGCCTTAGAGAAGAAGCCTTTATTTCAACATGTAGCAGTTCGGTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGTTTGTTGGATGCTACTGTCAGAAACATAGGCTCTACTGATGAGGCTATAAGGAAACTTTGTTGTTCCACGATTAAATCTCTCTTTACAAATGAGGGTAAACATGGGGGTGAAGTCACTGTTGAGGCAGTTCGATTGATTGCCGATTATGTTAAAGCTTATAATTGTCAATTGCATCCAGATTCTGTTGATGTGTTCTTGTCCCTTTCATTTAACGAGGATCTCTTGAAGTCTGGAAAGACAGAAGAGGATCAGAAATTAAAAGATAAGAAAAGTAAGAAAAGGAAACACTCTGATGTGTCAAATCAGTTGGAGAATGATAGAAAGAAAAGTAGGCAAGAATCGATTTCTAAGACGAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTGCCCTGGATGTTATGGAGAGGAAACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACATACTTTCGTATTTTGAAGCATACAATGCAGTCAATCGGTGCCGGGCCTGAAGCTAACGCTGGGGCATTATCTGCTGCAGTGGAACCCCTCCCTTTACTTGCTCCTTGTCTGAAAGGACTGGCAAAATTCTCACATCTGATTGACCTTGATTTCATGGGTGATCTGATGAATCATCTGAAAGTACTTGCTTCTGGAAGTAGCAATTCAGGCAACACTTCTGACAAGTGTTCCAAATGTTTGACTGTATCGGAACGACTCCAATGCTGCATTGTTGCCTTTAAAGTGATGAGGAACAATCTTGATGCCCTGAATGTTGATTTACAGGACTTCTTTATCCATCTTTACAATCTTATTCTTGAATACAGGCCAGGAAGAGATCAAGGAGAGGTTTTGGCAGAAGCTTTGAAGATAATGTTGTGCGATGATAAGCAACATGACATGCAAAAGACTGCTGCATTTATAAAACGATTAGCAACATTTTCACTGTGTGTTGGATCAGCAGATTCCATGGCTGCCTTGGTCACAGTAAAGCATCTCCTTCAGAAGAATGTCAAATGCAGAAATTTGTTGGAAAATGATATTGGAGGAGGCTCTGTTTCTGGCACAATTCCTAAATATCTACCATATTCCACAGATCCCAATTTAAGTGGTGCCCTTGCCTCGGTACTTTGGGAACTCAATCTTTTGTCCAGCCATTATCATACAGCTATATCAACACTGGCCTCGGGAATTTCAAGTATGAGTACTGCACATAACCAGGTCCTTTTATCCAAGTCCTCTCCTCAACTAGCTTTCAAGGAAATGTCTCTGGACCAAGAATTATGTTTCACACAACAAAGTGGCAGTATAAAATTAAAAAACAAGAAACGATCAAATGGCCCTGCTGCATCCATTGGTTCTACAACTGTTAAGAGCTCATTTGATGACAATGAGTTGCAGAGGAAACTTGTTTCCCATTTCATGGTTCATCATGACATCAAGGAAAATGAAAGGTTGAGAAAAGAGCTGGACAGGACTGCATTATCGCTACAGCTATATGAACAATATAAGAAACAAAAGAAACAATCAAAACCAAGGAGATGA 2484 0.411 MGKKQKVVLPPDLPPEVPDDEVEVSDEDLQFIKENRNYASLLSTLDTHSITKHVTRVADAKDDALEKLYEKRMQKNALKKEKEETGLQVDRVDALPIKTLDGKLHYRTASKAVSENDLSEEGTAEDANADEGMVKLTKAEKRAKLKKMKKEAKKQGKEVAKAEVEETPHAAVLAEVKEDLTAEQTFESKKCKLAELGNALLTDPESNIKLLKEMVQLSKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLVALEKKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNIGSTDEAIRKLCCSTIKSLFTNEGKHGGEVTVEAVRLIADYVKAYNCQLHPDSVDVFLSLSFNEDLLKSGKTEEDQKLKDKKSKKRKHSDVSNQLENDRKKSRQESISKTREEVEADYKAASFALDVMERKQMQTETLSAVFETYFRILKHTMQSIGAGPEANAGALSAAVEPLPLLAPCLKGLAKFSHLIDLDFMGDLMNHLKVLASGSSNSGNTSDKCSKCLTVSERLQCCIVAFKVMRNNLDALNVDLQDFFIHLYNLILEYRPGRDQGEVLAEALKIMLCDDKQHDMQKTAAFIKRLATFSLCVGSADSMAALVTVKHLLQKNVKCRNLLENDIGGGSVSGTIPKYLPYSTDPNLSGALASVLWELNLLSSHYHTAISTLASGISSMSTAHNQVLLSKSSPQLAFKEMSLDQELCFTQQSGSIKLKNKKRSNGPAASIGSTTVKSSFDDNELQRKLVSHFMVHHDIKENERLRKELDRTALSLQLYEQYKKQKKQSKPRR* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0688 827 Coils Coil 65 85 - -
Vra2g0688 827 MobiDBLite consensus disorder prediction 1 24 - -
Vra2g0688 827 SUPERFAMILY ARM repeat 200 591 IPR016024 -
Vra2g0688 827 PIRSF Noc3 2 821 IPR016903 -
Vra2g0688 827 MobiDBLite consensus disorder prediction 410 434 - -
Vra2g0688 827 Coils Coil 138 165 - -
Vra2g0688 827 MobiDBLite consensus disorder prediction 394 434 - -
Vra2g0688 827 Pfam Nucleolar complex-associated protein 189 279 IPR011501 -
Vra2g0688 827 Pfam CBF/Mak21 family 553 708 IPR005612 -
Vra2g0688 827 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 2 783 IPR016903 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0688 1 803 Core DNA Replication Machinery Family AT1G79150 57.927 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0688 K14834 - gmx:100776136 1313.13