Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0677 ATGGACTTCATAGAAGACTTTACCCTCGTGTCGGAGCAGCGCCGGGAGTTCGCCAACGCCGAGGACATGGAATCCGACCTGGAATTTGCCTTCCGTCTCCAATTGCAGGAGGCTCTCAAGGCCTCCCTCGCTTTGAATCCGTCTTCCTCCTCCGCTGTTATCGAACAGCGTACTGTTGACGACGAAGGCGTGCTAAATGCGACCTCACTGCAGAATGAGGAGTTGGCGCGTGTGGAGTGCGAGATGAAGGACCGGGAGCAGAGCGAGAGGGAAATGCAGAAGACGAGGGAGGATCTCTGTCGAAGGATCCACGACCGGAAGGTGGCGATTGATATATTGACGATTTCTGAGGAGGATTGGCAGCAGTGGGGCGATAACTTTGAGAAGCCGTTCGGTGAGGGTTCATCTTCTTCGGGTAGGACGGAGACTGAGGAAGGCTTGGTTAGGATTTACTTGAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGGAGAAGGTTGTGTTATCTGGGATAGGGGTTGCGATTTGTGACCGTAGTGATAATTTGATATTCGAGGTTTCTAAGGCGGTGATTGGGAATGGCACTAGCAAGGTCGCAGTGGAGATTAAGGCGTTGATTGAAGCCTTCAATATGGCCCTTGCTTTGGACTTAAAGCGCATAGTTTACTATACCGATAATTATCCGTTCCTCCAATTTGTGAGAGGAAAATGGTCTGCAAGACAGCAGAAGATTGCCATGTTGGTTGATCAAGTTCATCTGCTTCAGAGGAAGTTTACATACTGCGATTCAAGGCTTTTGGCCAGAAATAATTTCAAGTTTGCATTTAAGCTTGCGAGGGATGCGATTGTGTCTCAATCTATGACACCCGCAGGACCTGGGAGTACGAGGAGTTTGAATGAAAATTGTGCTATATGTTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATGGATGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTTGAGGTGAAGTTGCTTCATGGAATTGTGCCTAAGTGCCCTCATGAGGGATGTAAGTATGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATATCATGCGTCAACGCCAAGCAGAAGCTTCAATTCCTGTTGCTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAAAACTGAGGTCTTTGAGTACTCGAAAAGTCTTATTGGTGAATCTGAACTGTCGGGACCCAAGAAATGCTTAAAATGTCACGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTTTATGTACAAAACGTTGAATCCCAACCCTCCTGCTGAAGATTTGAAGCTAAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCCGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTCGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGGACAAAAAAGCAACGTGTTCTTGCCCGCTCTGGGCAGAAGACAATATTTGGATGGAGGAGAGAGAGTTGGACGAGATTGACGATGATGACGACGAGGACGATGACTACTACGATGACTACGACGACTTTGGAGGTTGGCGTTGA 1656 0.4692 MDFIEDFTLVSEQRREFANAEDMESDLEFAFRLQLQEALKASLALNPSSSSAVIEQRTVDDEGVLNATSLQNEELARVECEMKDREQSEREMQKTREDLCRRIHDRKVAIDILTISEEDWQQWGDNFEKPFGEGSSSSGRTETEEGLVRIYLKGLVSEENVRGEKVVLSGIGVAICDRSDNLIFEVSKAVIGNGTSKVAVEIKALIEAFNMALALDLKRIVYYTDNYPFLQFVRGKWSARQQKIAMLVDQVHLLQRKFTYCDSRLLARNNFKFAFKLARDAIVSQSMTPAGPGSTRSLNENCAICLEDTDVSQIFSVDGCQHRYCFSCMKQHVEVKLLHGIVPKCPHEGCKYELLVDSCQKFLTQKLTDIMRQRQAEASIPVAEKVYCPYPRCSALMTKTEVFEYSKSLIGESELSGPKKCLKCHGLFCFNCKVPWHSGMTCFMYKTLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKATCSCPLWAEDNIWMEERELDEIDDDDDEDDDYYDDYDDFGGWR* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0677 551 Gene3D - 149 288 IPR036397 GO:0003676
Vra2g0677 551 Gene3D - 440 548 - -
Vra2g0677 551 ProSitePatterns Zinc finger RING-type signature. 320 329 IPR017907 -
Vra2g0677 551 MobiDBLite consensus disorder prediction 527 551 - -
Vra2g0677 551 ProSiteProfiles TRIAD supradomain profile. 298 522 IPR044066 -
Vra2g0677 551 Pfam Reverse transcriptase-like 165 281 IPR002156 GO:0003676|GO:0004523
Vra2g0677 551 MobiDBLite consensus disorder prediction 527 544 - -
Vra2g0677 551 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 30 523 - -
Vra2g0677 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 384 IPR013083 -
Vra2g0677 551 SUPERFAMILY RING/U-box 301 381 - -
Vra2g0677 551 SMART ibrneu5 455 512 IPR002867 -
Vra2g0677 551 SMART ibrneu5 369 442 IPR002867 -
Vra2g0677 551 ProSiteProfiles Zinc finger RING-type profile. 302 346 IPR001841 -
Vra2g0677 551 Pfam IBR domain, a half RING-finger domain 383 442 IPR002867 -
Vra2g0677 551 Pfam IBR domain, a half RING-finger domain 461 510 IPR002867 -
Vra2g0677 551 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 523 IPR031127 GO:0004842|GO:0016567
Vra2g0677 551 Coils Coil 78 98 - -
Vra2g0677 551 SUPERFAMILY RING/U-box 456 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0677 Vra-Chr2 5719153 5723304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0677 149 501 C3H Transcription Factor Family AT2G19610 32.961 2.62e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0677 - - aprc:113858620 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0677 2 5719153 5723304 Vra2g0677 2 5719153 5723304 ECH