Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0676 ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCTCCACTTTCTCACTCCCCCACTTCCTCTTCTTCTTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCGTATTTCCCTCCCACTGAACCTGCAAAGTTTACCATTGCTCACCGTGTGTTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCCAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATCTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAATCACAAGCTGAGCTTGTAACCATGCAACTTCAACAAGCCAATCTTGTTGCTCTAATCTGCATGGAAATGGCACAGAGCCCACAGGAATCACCACAACAATCAGTGGACAATTTCATTTCAACTCCTCCTCACACTGGCGGCTATCAAAGCGGCATGAACAACTTCTTCGAGGATAACACTAGCCCAAACGCACTATGGGAGCCCCTTTGGACTTGA 615 0.4927 MESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHTGGYQSGMNNFFEDNTSPNALWEPLWT* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0676 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 201 - -
Vra2g0676 204 Coils Coil 117 144 - -
Vra2g0676 204 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g0676 204 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Vra2g0676 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 20 201 - -
Vra2g0676 204 MobiDBLite consensus disorder prediction 1 32 - -
Vra2g0676 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0676 Vra-Chr2 5697622 5699739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0676 34 204 AS2 family AT2G28500 66.667 4.02e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra2g0676 LOB 2.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0676 - - gmx:100789504 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0676 2 5697622 5699739 Vra2g0676 2 5697622 5699739 ECH
Vra4g0299 4 5676999 5678262 Vra2g0676 2 5697622 5699739 ECH
Vra4g0299 4 5676999 5678262 Vra2g0676 2 5697622 5699739 PCT