Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0669 ATGAATGAGTTCGTAGAAAACTTGCCGCCAATGGATCTGATGCGTTCGGAGAAGATGACCTTCGTTCAGCTCATCATCCCCGCAGAGTCCTCCCACCGCGCCATCACCTATTTAGGCGAACTCGGCCTCATCCAATTCCGAGACTTAAATGCCGAAAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAGTGGCTTCTCCTTCGGTCTTGCAATCAGATATTCACCTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGAGAAACTTCGGCAATCATATAATGAACTGCTGGAGTTCAAGATTGTATTAGAAAAGGCATGTAGTTTTCTTGTTTCAAGCCATGGTGCTGTCATTTCAGAAGAGCGAGAATTGGAGGAGAATGTTTTCTCAAAGGGAAACTATGTCGAGACGCCATTTTTATATCAACAGGAAATGACACCTGCACCGTCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGATTTGAAAGGATGTTGTTTCGAGCTACGAGAGGGAATATGCTTTTCAATCAGGCACCAGCTGATGAACAAATCATAGATCCTATTTCATATGAGATGGTTGAGAAAATTGTCTTTGTTGTGTTCTTCTCTGGGGAGCAAGCAAGAACAAAGATCCTGAAAATTTGTGAAGCATTTGGTGCAAATTGTTACCCTGTCCCTGAAGATATAAGTAAGCAGAGGCAAATAACATCAGAGGTATCGGCACGCCTTGCAGACTTAGAGGCAACTCTGGAAGCTGGAATTAGGCATCGGAACAAGGCTCTAGCTTCTGTAGGAGGCCCTTTAACAATATGGATGGACATGGTAAGAAGAGAGAAGTCTGTGTATGATACACTGAACATGTTAAACTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTGTATTTGCAAAAACACAGATTCAGGAGGCACTGCAACGTGCAACTTTTGACAGCAATTCTGAGGTTGGCATAATCTTTCATTCAATGGATGCTCTGGAATCACCACCTACATATTTTAGGACCAACATTTTCACAGGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACAGTTATTACATTCCCTTTTCTTTTTGCGGTGATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGGTTCTTATAGCACGTGAGAGCAAGCTCAGCACCCAGCGCCTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTACTTTTGATGTCTCTATTTTCTATTTATTGTGGGTTAATATACAATGAATTCTTCTCTGTTCCTTATCACATATTTGGTGCCTCTGCTTACAAATGCCGAGATAATACATGCAGGGATGCACATACTACTGGCTTAGTAAAATATCGAGAACCATATCCATTTGGTGTGGATCCCAGCTGGCGGGGAAGTCGATCAGAATTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCACATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCATTTCTTTGGCAGCTCACTGGATATAAGGTACCAGTTTGTGCCCCAGATGATTTTCCTTAATTGTTTATTTGGATATCTATCCCTTCTCATCATTGTTAAGTGGTGCACTGGCTCTCAGGCAGATCTTTATCATGTAATGATTTACATGTTTTTAAGCCCTTTCGACAATCTTGGTGAGAATCAATTGTTCTGGGGTCAAAGACCACTTCAAGTTGTGTTGTTGCTTTTGTCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATGTTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTATGGTGTGCTTAATTCCTCTGAGGTTGATCTTGAGTTGGAACCAGGTTCTGCCAGGCAACGTGACGATGACTTCAATTTCACAGAAGTCTTCGTTCACCAAATGATTCACTCCATTGAGTTTGTCCTAGGTTCAGTTTCAAATACGGCCTCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATCTTATCATTCGGTTGCTCGGACTAGCTGTCTTTTCCTTTGCAACTGCCTTTATACTATTAATGATGGAGAGTCTCAGTGCTTTTCTTCACGCGTTGCGTCTTCACTGGGTGGAATTTCAGAATAAATTTTACCATGGCGATGGATGCAAGTTCAAGCCTTTTTCCTTTGCTTCCTTAACAGAGGATGAAAGTTGA 2457 0.4143 MNEFVENLPPMDLMRSEKMTFVQLIIPAESSHRAITYLGELGLIQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLVASPSVLQSDIHLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLEKACSFLVSSHGAVISEERELEENVFSKGNYVETPFLYQQEMTPAPSDQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIIDPISYEMVEKIVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITSEVSARLADLEATLEAGIRHRNKALASVGGPLTIWMDMVRREKSVYDTLNMLNFDVTKKCLVGEGWCPVFAKTQIQEALQRATFDSNSEVGIIFHSMDALESPPTYFRTNIFTGPYQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNTCRDAHTTGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVVHMNLGIILSYFNAHFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPFDNLGENQLFWGQRPLQVVLLLLSVIAVPWMLFPKPFMLKKLHNERFQGRTYGVLNSSEVDLELEPGSARQRDDDFNFTEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGCKFKPFSFASLTEDES* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0669 818 PIRSF ATP6V0A1 9 818 IPR026028 GO:0000220|GO:0046961
Vra2g0669 818 Pfam V-type ATPase 116kDa subunit family 37 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vra2g0669 818 Coils Coil 99 126 - -
Vra2g0669 818 PANTHER VACUOLAR PROTON ATPASES 5 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vra2g0669 818 PANTHER VACUOLAR PROTON ATPASE A1 5 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0669 Vra-Chr2 5595438 5607481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0669 1 811 Primary Pumps ATPases(2) AT2G28520 79.387 0.0 1331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0669 K02154 - gmx:100800799 1517.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0669 2 5595438 5607481 Vra2g0669 2 5595438 5607481 ECH
Vra4g0294 4 5621243 5631589 Vra2g0669 2 5595438 5607481 PCT