Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0664 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGAGACTCGCCGGTTCCGTTAGAGGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCGAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCTGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAACGACGTCGTAACGAAGGAGTTGTTTCCGGTGAGCGGAGGAGTGGCAACGTCGTCGTTTTCGGCTAGAAAAAGTTTCGTGGATCTAGCGTTCGATCGTGAGGGAGGAAACAGTGACACGAAGATGCTTCAGCCGCAGCCTCAGACTCAGACTCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCCGACATCAATTTCAATCTGAGTGATTATGAAGATGATCTTAGACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGTTAGCAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGTCTCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTGATTCAGGAGTTGGTAATCCATCTTTTAAAAGACTGGTTGTGAATGAAGACTGTCCTTCTGTATGGAACGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACACGGAGCATTCGAAAGGACTGCCCAATTGGGCGTGGCAAACGCATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTCCAATCCCCAGAGTCTCTGTTTTACTTCATCCACCATGCATTCGTCTGAATATTATTACCAGGTTAAGCCCCGGCAGGCTCCACTGTAG 1446 0.4772 MLDLNLNAEWTDSARDGDSPVPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGCCDEDSCSTRADDVYTFNFDILKVEGANDVVTKELFPVSGGVATSSFSARKSFVDLAFDREGGNSDTKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEVSNHNLDLNLGIATPGTGLKENWQQLQFPSVHYNTHGGISSMMETNVDSGVGNPSFKRLVVNEDCPSVWNGMCPSFFPNEEKTERMNTEHSKGLPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNSNPQSLCFTSSTMHSSEYYYQVKPRQAPL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0664 481 MobiDBLite consensus disorder prediction 116 149 - -
Vra2g0664 481 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Vra2g0664 481 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Vra2g0664 481 MobiDBLite consensus disorder prediction 119 137 - -
Vra2g0664 481 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Vra2g0664 481 MobiDBLite consensus disorder prediction 32 56 - -
Vra2g0664 481 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 MobiDBLite consensus disorder prediction 1 56 - -
Vra2g0664 481 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 454 - -
Vra2g0664 481 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 454 - -
Vra2g0664 481 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Vra2g0664 481 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Vra2g0664 481 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0664 Vra-Chr2 5533823 5537914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0664 73 323 AP2-EREBP Transcription Factor Family AT4G36920 66.917 2.91e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra2g0664 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0664 K09284 - gmx:100788303 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0664 2 5533823 5537914 Vra2g0664 2 5533823 5537914 ECH
Vra4g0289 4 5561176 5565424 Vra2g0664 2 5533823 5537914 ECH
Vra4g0289 4 5561176 5565424 Vra2g0664 2 5533823 5537914 PCT