Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0662 ATGTTGGGAAAGGGAAAAGAGGTTTGGCAGAACATAAATATGATTTTTGACAAAAAGAGCCTCAATTGTGGAGTAGCCAATGGAGGGGTAAGTTCTGGATCATTAACAGAAGGTGACCCAAGATTTAATACGCTGTGTCAAGATGGAAACAATGGATTGAGGGGTCTGATTCAAATCAATGGGATCTTGCAGGTTTCACAGCAACCACCTCAAGGGCCAGTCATTTGCTGGGATAGATTTCTCCCTGTGAGATCAATAAAAGTTTTGCTGGTGGAAGATGATGATTCCACACGCCATGTTGTGCGTGCTCTTTTATGCAATTGTAGTTACGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCCTGGAAAGTCCTAGAAAATCCAGAAAATTGCATTGGTCTTGTCTTAACAGAGGTAGCTATGCCAATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAGAATATCCCTGTGATTATGATGTCGTCTCATGATTCTATGGGTATCGTCTTTAAGTGTTTGTCAAAAGGTGCTGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAATCTTTGGCAGCATGTCTGGAGAAGATGCCACAGTTCTAGCGGCAGTGGGAGTGAAAGTGCGACCAACTTCAGAAAATCTACAAAGTCAAGAAGTAATGATGCTTCTGAAAACAATAGTGACAGCAATGAGGAGAATGACTATGGAAGCAAAGGCTTGAGCATTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCGTGGACTAAATGTCTGGCTCAAGTTGGCAGTCCTCATCCACTTTCACCACGTAAACAATTGGTTGATCCCCCTGATAGCACTTGTGCCCGAGTGATGCAAACGAAGACTGAAAAAGTTAGTAGTAGATGGGTGCATGCAACAGAAAAGGAGTGCCTTGAACTTATTGATCATCTTGATGATGTTGCAATGGGCAAGGACTTGGCTGTGGGAATATCTTTGAGTACGCAACTAGAGCATCGACTTGAGGGACTGTCTAGCCATCCAATGGGTAAAGGGGCAAATAAAATGTCTGATGATGATGATATGCAGATAGTTAAAGGACAGAGTAATAATGCCTGTGAAAAAGGAGAAATGGAATGCAATGGTGGTAAAACCAGGACACAGGAAAATCATACTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGACTGAAAGCAGAGACTTGAACACTCCAAATGGGTTCTCTGGTTTCTCACTAACGAAAGAAAACTCTTGCCCCAAAGAGCATCCATCCCTGGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATCCTAAAAATGTCACGGGTGAAGAATGCAATGTTTTGAGACATTCAGACCAATCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACAGGAAATGTAGGAAGCTGTTCTCCACTGGCCAATGGCTCAGCTGCACCTAATGCAGAGGTAATACATTTTCCATCTCACTCAAATGTCACTCCTCCAAACCAGCAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCATTAATACATATCTTGGCACCAAACCTTGTAATTTTGACAAGATGCCAGAGTCTGTAGGAGGTTTGGGCTCATTTAATTCCTCTGAACTCCGAGCATTACGGAACAATAGTATCTCTTCGTCTCAGAAGAAAACTTATGCCCGGGAAGAATATATGGAAATTGTTAGAGGACAAGTGGGAAGCTCTGAACATGAATTCAAAGCCGAGCACACTCATTATGAGCTTCACCATTATAATCACATTTCCCGTAAAGCGGCTGTAGATCTACAATCAGATCATGATCTCTTACTCAAAAGACCAACCAACACTGCTCAGCAATGTGTATCATCAAATGCGTTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACACAATAGATGGAAATGCTGGGGAGAGTGATCACGGGAGCAATGGACATGGGAGCAATGGACAGGACGGAACCATGACAATGAGGACAGTAAATGTGGAAAATGGCAATGTGGCTCTTGGGAGCATTGGAATTGGTGGCATTGATAGGAAAAACATTGGGAATGGGGCAGATGAAGGACGACTTTCATTGAGAGAGGCTGCTTTAACCAAGTTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGCAGGAAAAAATTAGCAGAACAGCGACCTCGTATTAGGGGACAATTTGTTAGACGAACAGTGTCTGAAGCCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGGTACCTGGGGATAATACCGACATTCCTCAATGA 2373 0.4227 MLGKGKEVWQNINMIFDKKSLNCGVANGGVSSGSLTEGDPRFNTLCQDGNNGLRGLIQINGILQVSQQPPQGPVICWDRFLPVRSIKVLLVEDDDSTRHVVRALLCNCSYEVTAVSNGLQAWKVLENPENCIGLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATNFRKSTKSRSNDASENNSDSNEENDYGSKGLSIRDGSDNGSGTQSSWTKCLAQVGSPHPLSPRKQLVDPPDSTCARVMQTKTEKVSSRWVHATEKECLELIDHLDDVAMGKDLAVGISLSTQLEHRLEGLSSHPMGKGANKMSDDDDMQIVKGQSNNACEKGEMECNGGKTRTQENHTMNVIDVTDSNSPQTESRDLNTPNGFSGFSLTKENSCPKEHPSLELTLKRLGEVRDPKNVTGEECNVLRHSDQSAFSKYNTASSANQAQTGNVGSCSPLANGSAAPNAEVIHFPSHSNVTPPNQQSNGSNNINDMASINTYLGTKPCNFDKMPESVGGLGSFNSSELRALRNNSISSSQKKTYAREEYMEIVRGQVGSSEHEFKAEHTHYELHHYNHISRKAAVDLQSDHDLLLKRPTNTAQQCVSSNAFGGPAESNAANYTIDGNAGESDHGSNGHGSNGQDGTMTMRTVNVENGNVALGSIGIGGIDRKNIGNGADEGRLSLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRTVSEAKEEKDHQSDNLVPGDNTDIPQ* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0662 790 ProSiteProfiles Response regulatory domain profile. 87 205 IPR001789 GO:0000160
Vra2g0662 790 MobiDBLite consensus disorder prediction 209 247 - -
Vra2g0662 790 CDD psREC_PRR 88 191 - -
Vra2g0662 790 Pfam Response regulator receiver domain 88 199 IPR001789 GO:0000160
Vra2g0662 790 MobiDBLite consensus disorder prediction 756 790 - -
Vra2g0662 790 ProSiteProfiles CCT domain profile. 722 764 IPR010402 GO:0005515
Vra2g0662 790 MobiDBLite consensus disorder prediction 756 780 - -
Vra2g0662 790 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 757 IPR045279 GO:0009736
Vra2g0662 790 MobiDBLite consensus disorder prediction 209 266 - -
Vra2g0662 790 SUPERFAMILY CheY-like 84 210 IPR011006 -
Vra2g0662 790 MobiDBLite consensus disorder prediction 641 684 - -
Vra2g0662 790 Pfam CCT motif 722 764 IPR010402 GO:0005515
Vra2g0662 790 SMART REC_2 86 201 IPR001789 GO:0000160
Vra2g0662 790 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 32 757 - -
Vra2g0662 790 Gene3D - 85 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0662 Vra-Chr2 5394317 5431146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0662 70 493 Response Regulator Gene Family AT5G60100 45.977 1.11e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vra2g0662 Response_reg 1.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0662 K12129 - gmx:100785796 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0662 2 5394317 5431146 Vra2g0662 2 5394317 5431146 ECH