Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0661 ATGGGTTGCTTTTGTTGCGCAGGGAAATCATGCACCAATTCGGACACTGAAGAGTATGGCCAGAATTTCGACCAGAAACCCTCCAACTTCACTGCCGCAGAAAGCGTCAAAGTTGATTTCAAAGTGAATGGGAAAAAGGAAGATGGTTCTAAAGGTGATCAGCTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAAGAGGGTTCTCAGGATGAAAGAGATAATGGCAATCGAGCGCAGTCATTCAGTTTTAATGAACTCGAAGCTGCGACGGGAAATTTTACGGCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGAGAATTCGCGGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAATTCATGCCATTGGGGTCTTTGGAGAACCACTTGCTTGATCTTCGACCTGGTAGCAAACCACTAGATTGGAACACAAGAATGAAAATAGCAGCTGGGGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTGATATATCGCGACTTGAAATGCTCTAACATTTTGTTAGGAGAGGGATATCATCCTAAGTTGTCAGATTTTGGCCTGGCAAAAGTAGGTCCAAGTGGTGATAAGACCCATGTTTCAACAAGGGTTATGGGCACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAGTTGACATTCAAGTCAGATATTTATAGCTTTGGGGTTGTTCTCTTGGAGCTTATCACAGGGCGAAAGGCTATTGATCATATGAAACCTGCCAAAGAACAAAATCTAGTTGCATGGGCAAGACCCTTGTTCAGAGATAGGAAAAAGTTTCCCCAGATGGTTGATCCTTTACTTGAAGGTCGATATCCGGTGAGAGGGTTATACCAAGCTCTTGCCATTGCTGCAATGTGTGTTCAGGAGCAGCCTAATATGCGACCTGTCATAGTTGATGTTGTTACAGCTCTAAATTACTTAGCTTCTCAGAAGTATGATCCTCAACATCATCCAGCACAAAGCTCTAGAAGAAGTCCACCTTCTCAGGTAATGCAAAGGGATGATGATGATCAACGTAGACTTATTTTAAGCACCGAGCATGTGACAGACAGATCATAA 1251 0.4341 MGCFCCAGKSCTNSDTEEYGQNFDQKPSNFTAAESVKVDFKVNGKKEDGSKGDQLALDVKSLNLKEEGSQDERDNGNRAQSFSFNELEAATGNFTADCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFAVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEFMPLGSLENHLLDLRPGSKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHMKPAKEQNLVAWARPLFRDRKKFPQMVDPLLEGRYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQHHPAQSSRRSPPSQVMQRDDDDQRRLILSTEHVTDRS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0661 416 Pfam Protein tyrosine and serine/threonine kinase 99 310 IPR001245 GO:0004672|GO:0006468
Vra2g0661 416 PANTHER OS07G0668900 PROTEIN 1 400 - -
Vra2g0661 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vra2g0661 416 MobiDBLite consensus disorder prediction 378 392 - -
Vra2g0661 416 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 400 - -
Vra2g0661 416 MobiDBLite consensus disorder prediction 393 416 - -
Vra2g0661 416 Gene3D Phosphorylase Kinase; domain 1 63 170 - -
Vra2g0661 416 PIRSF ILK 25 98 - -
Vra2g0661 416 PIRSF ILK 75 385 - -
Vra2g0661 416 Gene3D Transferase(Phosphotransferase) domain 1 171 390 - -
Vra2g0661 416 CDD STKc_IRAK 100 369 - -
Vra2g0661 416 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0661 416 SUPERFAMILY Protein kinase-like (PK-like) 80 392 IPR011009 -
Vra2g0661 416 MobiDBLite consensus disorder prediction 376 416 - -
Vra2g0661 416 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0661 416 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0661 Vra-Chr2 5381788 5385849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0661 60 373 Glycoside Hydrolase AT3G07070 62.025 1.60e-145 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra2g0661 PK_Tyr_Ser-Thr 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0661 - - gmx:100804000 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0661 2 5381788 5385849 Vra2g0661 2 5381788 5385849 ECH
Vra4g0284 4 5478501 5481341 Vra2g0661 2 5381788 5385849 ECH
Vra4g0284 4 5478501 5481341 Vra2g0661 2 5381788 5385849 PCT