Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0660 ATGAGAGTCAGCAGAATGGAGGCATTTCCCAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCTTCTTACTCCAACGAGAAGCCGGTCAACTCGCCATTGCGCACTCAATCCACGTGGAAGACGTGGATAGAGTCACGCGCCGAGGAGCCAGCGGAGCAGCAGCAACGCGGCGGTCCCGATGAAGTCACAGCCACGTCGTGGATGGCGCTAAAGGACTCCACTCCGCCGCTTCCATCACAGACACTCGCCGCCGTGCTCGGTGAGCCTCTGGCGGAGGTCGGAAATGCCGCGAAGCGCGCCGCGGAATGGGGTCTGGTGCTGAAGACGGACACGGAAACCGGGAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGTGGGGAGGAGCAGAGCTCGAAGGTGACCGGTGGGTCGAGGAGGGACTCCGGAAACTCCGTTCGGAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCTCGGGTTTCGGAAGACCTGAGGGACGCTCTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGGTTTTTCAAGATGACGGGTTACACATCGAAGGAAGTCATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCAGACACTGATCCGGATGATGTGGCAAAGATAAGGGAGGCCTTACAAACCGGTCAGACCTACTGTGGAAGGTTACTCAATTACAAGAAGGACGGCACTCCCTTTTGGAACCTTCTCACTATTGCCCCAATCAAGGACCACGATGGCAGAGTCCTTAAATTTATAGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATTCTCGTCAAAAAGAAAAAGCAAATAGTTCAGTATCTGAGCTGTTGTTGGCTGTGAGAAGGCCACGGGCGCAGAGTGAATCAGGAGGCCGTCCCTTGATCAGAAAGTCAGCATGCGGTGATGATTATAAAGAAAAACCAGAAAAGTCATCGAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGCAAATCACATGCAGGAGACACGAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAAAACAAGACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGGAAAAGTCAGTCCAACTTTGGAAGCTTCAATGACGAAGCTGTTATTAAGGATAGTTCTGAGAGTAGTGATGAGGATGATGAGAGGTCTGGTAGCTTTGATGGCACAGTAAAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACTACACTTGAACGTATTGAGAAGAACTTTGTTATTACTGATCCTAGGCTGCCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTGGAGCTTACGGAGTATAGCCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCCATTGACACTCAAACTGACGTCACTGTGCAACTCATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTACAGTACTTTATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCAAAAGAGGGAGAACAATTGGTAAAGGAAACTGCTGAAAATGTTGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCGAAACCACATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATTGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAGAAGGGTATTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATCCTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTATTGTTCTGGTGGAGAACTATTCCTTCTTCTTGAGCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCCGCTGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTGTCCCTAACAGATTTTGATCTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCATCCATAAATGAAAAGAAGAAAGCACAGAAAAGCCAACAACCTCCAATATTTATGGCAGAACCTATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATACCAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTATCGGCTGCTGAACAGAGAGGCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAAAACCATCCATTCTTTCGGGGTGTCAATTGGGCACTAGTTCGTTGCACTAAACCTCCTGAGCTTGATGCACCTCTCTTCCAAACAACTGAAGAAGAAAAGGAAGCCAATTTTGAAGATCAAGTGCAAGAGGAGATGAACGTCTTCTGA 2940 0.4677 MRVSRMEAFPRDQRGSLEVFNPSSSYSNEKPVNSPLRTQSTWKTWIESRAEEPAEQQQRGGPDEVTATSWMALKDSTPPLPSQTLAAVLGEPLAEVGNAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEQSSKVTGGSRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKFIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDSRQKEKANSSVSELLLAVRRPRAQSESGGRPLIRKSACGDDYKEKPEKSSRRKSESVASFRRKSHAGDTSSMERITELPEKKNKTSRRRSFMGFIRKSQSNFGSFNDEAVIKDSSESSDEDDERSGSFDGTVKKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKETAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLERQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPSINEKKKAQKSQQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNREAKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLFQTTEEEKEANFEDQVQEEMNVF* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0660 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Vra2g0660 979 SMART serkin_6 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0660 979 Gene3D PAS domain 182 336 - -
Vra2g0660 979 MobiDBLite consensus disorder prediction 126 152 - -
Vra2g0660 979 CDD STKc_phototropin_like 648 955 - -
Vra2g0660 979 PANTHER PHOTOTROPIN-1 116 975 - -
Vra2g0660 979 PANTHER FLIPPASE KINASE 1-RELATED 116 975 - -
Vra2g0660 979 MobiDBLite consensus disorder prediction 117 165 - -
Vra2g0660 979 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Vra2g0660 979 Pfam PAS domain 189 285 IPR000014 -
Vra2g0660 979 Pfam PAS domain 471 563 IPR000014 -
Vra2g0660 979 MobiDBLite consensus disorder prediction 17 46 - -
Vra2g0660 979 SUPERFAMILY Protein kinase-like (PK-like) 633 958 IPR011009 -
Vra2g0660 979 ProSiteProfiles PAC domain profile. 242 296 IPR000700 -
Vra2g0660 979 SMART pac_2 245 287 IPR001610 -
Vra2g0660 979 SMART pac_2 525 567 IPR001610 -
Vra2g0660 979 Gene3D PAS domain 437 601 - -
Vra2g0660 979 MobiDBLite consensus disorder prediction 329 397 - -
Vra2g0660 979 SMART pas_2 170 239 IPR000014 -
Vra2g0660 979 SMART pas_2 450 519 IPR000014 -
Vra2g0660 979 CDD PAS 195 284 IPR000014 -
Vra2g0660 979 SUPERFAMILY PYP-like sensor domain (PAS domain) 464 563 IPR035965 -
Vra2g0660 979 Coils Coil 580 600 - -
Vra2g0660 979 ProSitePatterns Protein kinases ATP-binding region signature. 655 678 IPR017441 GO:0005524
Vra2g0660 979 SUPERFAMILY PYP-like sensor domain (PAS domain) 189 281 IPR035965 -
Vra2g0660 979 ProSiteProfiles Protein kinase domain profile. 649 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0660 979 Gene3D Transferase(Phosphotransferase) domain 1 733 950 - -
Vra2g0660 979 ProSiteProfiles PAS repeat profile. 168 239 IPR000014 -
Vra2g0660 979 Pfam Protein kinase domain 652 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0660 979 MobiDBLite consensus disorder prediction 345 396 - -
Vra2g0660 979 ProSiteProfiles PAC domain profile. 522 576 IPR000700 -
Vra2g0660 979 CDD PAS 463 563 IPR000014 -
Vra2g0660 979 MobiDBLite consensus disorder prediction 426 442 - -
Vra2g0660 979 MobiDBLite consensus disorder prediction 1 69 - -
Vra2g0660 979 MobiDBLite consensus disorder prediction 415 442 - -
Vra2g0660 979 ProSiteProfiles PAS repeat profile. 448 521 IPR000014 -
Vra2g0660 979 TIGRFAM sensory_box: PAS domain S-box protein 473 563 IPR000014 -
Vra2g0660 979 TIGRFAM sensory_box: PAS domain S-box protein 195 289 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0660 Vra-Chr2 5363773 5374482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0660 9 979 AGC Kinase Gene Family AT3G45780 68.813 0.0 1319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra2g0660 Pkinase 8.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0660 K20715 - gmx:100804524 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0660 2 5363773 5374482 Vra2g0660 2 5363773 5374482 ECH
Vra4g0282 4 5457018 5469459 Vra2g0660 2 5363773 5374482 PCT