Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0655 ATGTACACACACAGCAACGCCTCCCTCCCACGCTCCGCCGAATCCCTCGCCCATTTTCTCTCTCCGCAGGACGCATCCACGCCGTCGCCAATGCAGTACGCCGCCGCTCCTCAGCCGCAGCACCACCAAGTTGCCCTGGGCGAGTTTGATTCAGAGGCGAGTTCGAATAACACGTACAACAGCTGCAGCAGCGGATGCACCAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTTACGAGAGTCGGCGAGTGCAAAGGAGCGTAAGCAGCCACTCGCTGCAGAAGAACAGTGGTGGGCTCCACCACCCCTTTTCTCCTCTCTTCGCTCAGTTGCTTGATTCCCAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTTCATGGGCAATATTATCATCATTCAGATAGTCCATTATCGAGTGAAAGCAGCTTGATCATAGAAGAAATGAGCAGAACCAGTCCTTATAGTCCAGAGGAGAAGAAAGTGAGGATTGAGAGATATAGGAGCAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCATGCAGGAAGACATTGGCAGATAGCAGGCCAAGAATCAGAGGGCGATTTGCAAAGAATGAGGAAATTGCAATGAACCCTCCGGTTCAGTGGAGCCACATGGGTACCGGAGAGGAAGAGGACGAGGAAGAAGAGAATTGGGCCAATTTCTTTGATTCCATAGTTCCTGCAAATCTTGCTCAGGAGCCTCATGGCAGTAGTTCTTCCTTTGGCGCTTTCTATTGA 786 0.5178 MYTHSNASLPRSAESLAHFLSPQDASTPSPMQYAAAPQPQHHQVALGEFDSEASSNNTYNSCSSGCTSYMGSPSSLASYESRRVQRSVSSHSLQKNSGGLHHPFSPLFAQLLDSQNGPVRRACSTGDLQRFHGQYYHHSDSPLSSESSLIIEEMSRTSPYSPEEKKVRIERYRSKRNQRNFGKKIKYACRKTLADSRPRIRGRFAKNEEIAMNPPVQWSHMGTGEEEDEEEENWANFFDSIVPANLAQEPHGSSSSFGAFY* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0655 261 PANTHER CCT MOTIF PROTEIN 38 261 - -
Vra2g0655 261 ProSiteProfiles CCT domain profile. 165 207 IPR010402 GO:0005515
Vra2g0655 261 MobiDBLite consensus disorder prediction 1 42 - -
Vra2g0655 261 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 38 261 IPR045281 GO:0009909
Vra2g0655 261 Pfam CCT motif 167 207 IPR010402 GO:0005515
Vra2g0655 261 MobiDBLite consensus disorder prediction 77 99 - -
Vra2g0655 261 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0655 Vra-Chr2 5307963 5310534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0655 161 210 C2C2-CO-like Transcription Factor Family AT5G15850 50.000 2.35e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra2g0655 CCT 4.1e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0655 - - gmx:102667610 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0655 2 5307963 5310534 Vra2g0655 2 5307963 5310534 ECH
Vra4g0278 4 5405562 5407958 Vra2g0655 2 5307963 5310534 PCT