Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0653 ATGTGGGATTGCAGAGAAATTTGGTTATTTTTCTGTGGTTTAACAATCTTGCCCTTGGTATGTTTTTCTGCCAACTTCGTTCCTCTGGATAATTACCTTATTGACTGTGGAGCATCAACCGATACTGCTATAGATAACCGCAATTTCACAGCGGATAGTTTCTACAAGGATTTCCTTTCCACCCAACAAGATGTTCTTGCAAGCACCTCCTTAAAATCAATAGCTTCCTCCAGTGATTCGCCTCTTTATGCAACCGCAAGAATTTTCACTGCACCCTCAAAGTACACGTTTCCGATTAAGAAAAGGGGGAGACATTGGATCCGGCTTTATTTCTTTCCATTTGCATATGAGAAGTACGATTTGAGTGCTGCAAATTTCGCTGTTTCCACCCAGGACTATAATCTTGTGAGTGATTTTAGTGTGCAGAAAAACCATGTTATGAAGGAATACTCTTTAGATGTAAACTCAGACACCCTTGTGATCAACTTTGCCCCTTCTGCAAATTCCATTGCTTTTGTTAATGCCATTGAAGTTGTTTCGGTTCCTGATGGCCTCATTGTTGATAATGGTTTCTCCCTATATCCATCAGGGTCCTACTCTGGCTTGTTGACAAAAGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAAGTGTCTCCTCTGGCAATGACACGCTTCAACGAACTTGGGTTGCTGACGAAAAATTCCTCATACAACCTAACTTGGCCACTAATTTTTCAAACATCAGTGCTGTGAAATATGTAAATGGTGGTCCAACAGCAAATACTGCTCCACCTTCTGTCTATGGTACTCTGACAAGGATGAACTCAGCTGGTGATCCCCGAAGTAATTTCAATGTCACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTGTTCGACTTCACTTCTGTGACATAGTCAGCAAAGGCCTCAATGAGCTCTACTTTAATGTTTACATTAATTCCTTGTTGGCTGCTAAGGATCTTGATCTGAGTATCGTAAATAATAATGTTTTGGCTACTCCATTTTTTAAGGACTTGGTCACAGCCCCATCTGCCAGCACCAAAATGCTTGTAAGCATTGGCCCTTCTACTGTGAACAATAATTATCCTGATGCTATTTTGAATGGGCTGGAGATAATGAAAATGAACAATTCTGCGAGCAGTTTCAGCTCATCAACTGCGCCTGAGACAGGTTCTTCTGGTTCAGGTTCTAAGAAGGTTGGCTTGATAGTAGGCGTGAGTCTCGGGGCATTTTTTGCAGTGGTTATGGTTCTTGTTTTCTTTCTACTATGCAGGAAAAGAAGACGTTTGGAAAAAGAAAAACAAGGGCATTCAAAGACATGGGTTCCCTTATCAATCAATGATGGAACTTCCCACACCATTGGAAGTAAATACTCTACTGGCACATCAGGAAGTGCTGCTTCAAATTTTGGGTATCGTTTCCCTTTTGTGACAGTTCTGGAGGCTACAAATAATTTTGACGAGAGTTGGGTTATTGGAATTGGTGGCTTTGGAAAAGTATACAAGGGAGAATTAAATGACGGTACTAAAGTTGCAGTTAAGAGGGGGAATCCTCGGTCCCAGCAGGGGCTAGCAGAATTCCGAACTGAAATTGAGATGCTGTCACAGTTCCGCCACCGCCATCTGGTATCACTGATTGGATATTGTGATGAAAAGAATGAAATGATTTTGATATATGAATATATGGAAAAGGGAACTCTCAAAAGTCATTTGTATGGTTCAGGTCTCCCAAGCTTAAGTTGGAAGGAGAGACTTGAGATTTGCATTGGAGCAGCTAGAGGACTGCATTACCTTCACACAGGATATGCTAAAGCTGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTGCTTGATGACAACCTCATGGCCAAAGTTGCTGATTTTGGGCTATCAAAGACAGGGCCTGAAATTGATCAGACACATGTGAGCACCGCTGTGAAAGGGAGTTTTGGGTACCTTGATCCTGAGTATTTCAGGAGGCAACAACTTACAGAAAAGTCAGACGTGTATTCATTTGGGGTGGTTCTGTTTGAGGTTCTTTGCGCTAGACCTGTTATAGATCCAACCCTTCCTAGAGAAATGGTGAACTTGGCAGAATGGACAATGAAATGGCAGAAAAGAGGGCAATTGGAGCAGATAATAGATCCAACGCTTGCTGGGAAAATCAGACCAGATTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGTTTGGCTGACTTTGGTGTTGACAGGCCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTCCAAGAGGCTGTTGTTCAAGGTGACCCTGAAGAAAACAGTACTAATATGATCGGTGAACTGTCACCACAGCTCAACAATTTCGACCATGAAGTTAGTGTTTCTGCTGCACAATTTGAAGCTTCAAGTCTGGATGATCTGTCTGGTGTTTCTATGAGTAGGGTATTCTCACAGCTGGTGAAATCTGAAGGGAGGTGA 2514 0.4228 MWDCREIWLFFCGLTILPLVCFSANFVPLDNYLIDCGASTDTAIDNRNFTADSFYKDFLSTQQDVLASTSLKSIASSSDSPLYATARIFTAPSKYTFPIKKRGRHWIRLYFFPFAYEKYDLSAANFAVSTQDYNLVSDFSVQKNHVMKEYSLDVNSDTLVINFAPSANSIAFVNAIEVVSVPDGLIVDNGFSLYPSGSYSGLLTKALETVFRVNMGGPSVSSGNDTLQRTWVADEKFLIQPNLATNFSNISAVKYVNGGPTANTAPPSVYGTLTRMNSAGDPRSNFNVTWQFDVEPQFQYLVRLHFCDIVSKGLNELYFNVYINSLLAAKDLDLSIVNNNVLATPFFKDLVTAPSASTKMLVSIGPSTVNNNYPDAILNGLEIMKMNNSASSFSSSTAPETGSSGSGSKKVGLIVGVSLGAFFAVVMVLVFFLLCRKRRRLEKEKQGHSKTWVPLSINDGTSHTIGSKYSTGTSGSAASNFGYRFPFVTVLEATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDDNLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWTMKWQKRGQLEQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQLNNFDHEVSVSAAQFEASSLDDLSGVSMSRVFSQLVKSEGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0653 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vra2g0653 837 Pfam Malectin-like domain 34 386 IPR024788 -
Vra2g0653 837 Gene3D - 205 388 - -
Vra2g0653 837 Gene3D - 31 181 - -
Vra2g0653 837 SUPERFAMILY Protein kinase-like (PK-like) 477 768 IPR011009 -
Vra2g0653 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0653 837 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Vra2g0653 837 Pfam Protein tyrosine and serine/threonine kinase 502 695 IPR001245 GO:0004672|GO:0006468
Vra2g0653 837 Gene3D Phosphorylase Kinase; domain 1 461 572 - -
Vra2g0653 837 PANTHER OS07G0166700 PROTEIN 19 828 IPR045272 GO:0004714|GO:0006468
Vra2g0653 837 CDD STKc_IRAK 503 768 - -
Vra2g0653 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0653 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Vra2g0653 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0653 Vra-Chr2 5290079 5293349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0653 15 837 Receptor kinase-like Gene Family AT3G46290 65.343 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra2g0653 Malectin_like 2.5e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0653 - - gmx:100806488 1441.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0653 2 5290079 5293349 Vra2g0653 2 5290079 5293349 ECH
Vra4g0275 4 5387762 5391095 Vra2g0653 2 5290079 5293349 ECH
Vra4g0275 4 5387762 5391095 Vra2g0653 2 5290079 5293349 PCT