Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0635 ATGGGCCTATCGGAACATGGTCCATTTTCACACACCGTAAGGACATTTTGGTCATTTTCTAACACTTCGTATATAAACTTCATAAACCAAAACGTAAACCCTAGAGCCGGGTTTGTTCCTCTGCGCAGGAATTCGAAATATTTGACAGGTAGAGTTTTTCCAATGGCTCCCGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGTCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGACCTACCTTTAAGAAGAAGGCGAAGAAGATCCGAACTTCTGTGACTTTCCACAGGCCGAAGACATTGAAGTTGGACAGGAATCCGAAGTATCCTCGGATTAGTGCACCACCAAGGAACAAGCTTGATAGTTATCAGATCCTGAAGTTTCCTCTTACTACTGAGTCTGCTATGAAAAAAATTGAGGACAACAACACTTTGGTTTTCATCGTCGACCTACGTGCAGACAAGAAAAAGATCAAGAATGCTGTGAGGAAAATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCTTATGTCAGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATCGGCATCATTTAA 627 0.4322 MGLSEHGPFSHTVRTFWSFSNTSYINFINQNVNPRAGFVPLRRNSKYLTGRVFPMAPAKVDSSKKGDPKSQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKLDRNPKYPRISAPPRNKLDSYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKNAVRKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0635 208 ProSitePatterns Ribosomal protein L23 signature. 186 201 IPR001014 -
Vra2g0635 208 Pfam Ribosomal protein L23 128 190 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vra2g0635 208 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 55 208 - -
Vra2g0635 208 Gene3D - 89 208 IPR012677 -
Vra2g0635 208 PANTHER 60S RIBOSOMAL PROTEIN L23A 55 208 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vra2g0635 208 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 126 201 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vra2g0635 208 Pfam Ribosomal protein L23, N-terminal domain 69 118 IPR005633 -
Vra2g0635 208 Hamap 50S ribosomal protein L23 [rplW]. 128 208 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vra2g0635 208 TIGRFAM uL23_arch: ribosomal protein uL23 132 208 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0635 Vra-Chr2 5007097 5008733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0635 55 208 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 84.416 1.18e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0635 K02893 - jre:109021970 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0635 2 5007097 5008733 Vra2g0635 2 5007097 5008733 ECH
Vra4g0263 4 5282146 5283813 Vra2g0635 2 5007097 5008733 ECH
Vra4g0263 4 5282146 5283813 Vra2g0635 2 5007097 5008733 PCT