Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0634 ATGTCTTCTGATTATGGTGAAAGCAATAACCCTGCTCCATGGAAGCTGGAAGAGATTGTTTCAATTATTATAGTGTGCATTATCTTTCTTACACTGAGTGATTGCTACGGCCTATTCAAGCGTCTGTTGTGTGAAATTTTCCAAGGCAGAAACCAGGTTCCAAGGCGGTTTCTAGATGTGACCGTTCTGGACGATGATCCTTCCCTGCAGGTTCAAAGCAGAGGATTGGAGTTCTGTGTGGTGGAGTCTCTTCCAACGATTGAGTTCAAGAGAAACGAGGGAGAACAAGACAAGGGAAGTAATGTGGAATGTGTCATTTGTCTTGGAGAGTTTGAGGAAGGGGAGAGGCTGAAACATCTTCCAGAATGCAGCCATAGCTTCCATGTTTCATGCATTGACAAGTGGTTTCAGTCTCATTCAAACTGTCCTCTGTGTAGAGCATTGGTGCATCATCCCATGCTGCACTGTTCCTTAGATGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAAGACTTTGAAAGGGAAAATCTGCCTAACACACAACAGTTCCTTCCCCCTTGA 564 0.4486 MSSDYGESNNPAPWKLEEIVSIIIVCIIFLTLSDCYGLFKRLLCEIFQGRNQVPRRFLDVTVLDDDPSLQVQSRGLEFCVVESLPTIEFKRNEGEQDKGSNVECVICLGEFEEGERLKHLPECSHSFHVSCIDKWFQSHSNCPLCRALVHHPMLHCSLDASHTLLQPLRREDFERENLPNTQQFLPP* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0634 187 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vra2g0634 187 CDD RING-H2_EL5_like 103 146 - -
Vra2g0634 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 151 IPR044675 -
Vra2g0634 187 SUPERFAMILY RING/U-box 81 152 - -
Vra2g0634 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Vra2g0634 187 PANTHER RING-H2 FINGER PROTEIN ATL2 21 151 - -
Vra2g0634 187 Pfam Ring finger domain 103 146 IPR001841 -
Vra2g0634 187 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0634 Vra-Chr2 5005615 5006178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0634 66 149 Rapid Response to Elicitors AT3G16720 52.273 2.09e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0634 - - gmx:121172630 251.136