Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0631 ATGAACATGGCTTCACCTCATTTCTTCCTCATTCAGCTCCTACTTACTTTTTTCTTTCTCTCTTTAGCTTTTGGAGCCACTCTACCAGAAGATGAAGTGCAAGCTTTGAAAGACATAGGTGAGACTCTTGGGAAGAAGGATTGGGATTTCAGTGTTGATCCATGCAGTGGAGAACGCAATTGGACATCGCAAACTAAAGTGAGAGGGACAGAAAATACTGTCACCTGTGATTGCTCCTTTGAGAATGCCACAATCTGCCATGTTACTAACATACTTTTGAAAGTACAAAATCTCCGAGGCACTCTCCCAGTAGCATTGGTTAGATTGCCGTACCTTCAAGAAATTGATCTTAGTCGCAATTACCTGAATGGGACAATTCCTCTTGAGTGGGGCTTACTGAATCTTGTCCGCATTTCTCTGAGTGCTAATCGTCTAACGGGTTCAATCCCCCCAGAGCTAGCAAACATCTCCACTCTTCAAAGTTTGACCCTCGAATTCAACCAACTCTCTGGAAATCTTCCTAGTGAGCTTGGGAATCTTCCAAATATTCAAAGATTGCTACTTACCTCCAACAATTTTACTGGAGAGTTGCCTGCAACATTTGCAAGTCTCACTACTTTGCAGGAAGTTCGACTAGGGGATAACAACTTCTCTGGAAGCATACCCGATTTTATTCAAAGCTGGACAAGTCTCCAGAAACTAGTGATTCAAGGAACTGGATTAAGTGGGCCAATTCCTTCTGGAATTTCACTACTTGAAAGTTTAACAGACTTGAGAATTAGTGATATAGAGGGATCAGACTATTTTCCTTTTCCCCAACTTAACAATCTGGCAAATTTGGAAATTCTAATTCTGAGGAGTTGCAATATCAATGGAACAATACCTGAATATCTGGGGACTATGTCTAATTTACAAACCCTAGACCTCAGCTTTAACAGGTTAAGTGGACAAATCCCAAGCAGCTTTGAGTATGGCCTAAGAAAGACAGATTATATATATTTAACTGGAAACATACTCACGGGACCTGTACCTGCATGGGCAGAAAAAGACAAAAATGTAGATCTTTCGTACAATAACTTTAGCATGGAAAACTCAGGACAGCAGCCATGTCAACGGGGAAATGTGAACTTGTTTGCAAGCTCCTCGGTGGACAATAGCTCAGAATCCGTTTCATGTTTAAAAAGTGTTGCCTGTCCTAAAAAATACCTTGTACTAACTAGTCTGCTTGTCCCAGAATCATACTCCCTTCACATAAATTGTGGTGGAAAGCAAGTAACCGTCGATGGAAATGAAACATATGATGAGGATACAGATAATGCAGGACCAGCTAGATTCCATCTAAGTGGAAAAAACTGGGGGTTTAGCAGCACTGGTCACTTCATGGATAATGACCGTGCAGAATATTATATTTGGCTAAATCAATCTAAGCTTTTCTTGGCTGATGCTGAAATATACATGGATGCACGTGTTTCTCCCATTTCTCTTACTTATTATGGATTTTGCCTGGGAAATGGAAATTACACGGTGAATCTACACTTTTCAGAGGTCATGTTTACTGAAGATCAAACATATAACAGCTTAGGAAGGCGCATATTTGATGTCTACATTCAGGGAAATATGGTGCTCAAGAATTTCAATATTGCAGAAGAAGCAGGAGGAGTTAATAAAGCAGTCACAAAATCATTTACCATTATGATTAGCAGCAACACATTAGAAATCCGCCTATATTGGGCTGGGAAAGGCACAATTGGTATTCCATTTAAATCAGTATATGGTCCTCTCATATCAGCAATTGCTGTAAATCCTAACTTCATCCCTCCCTCAGAAAACGGAAGTAGAATATCTGCAGGTGCTGTGGTTGCAATTGTGGCTGGTGTAGTAGTTTTTCTAGTCCTGGTATTTGGTATACTTAGGTGGAGAGGCTTTCTAGGACAGAAAAGTTCTTTAGCAAAAGAGCTAAAGGGGTTAAAACTGCAAATGGGTATATTTACCTTACGACAAATCAAAGCAGCAACAAATAACTTCAACAAAGCCAACAAAATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGAAATTTATCAGATGGGACAATAATAGCAGTCAAGCAACTTTCTTCCAAATCAAGGCAGGGGAATCGTGAGTTTATAAATGAGCTTGGCATGATTTCAGCTTTGCAACATCCTTGTCTTGTTAAGCTTTATGGATGCTGTGTTGAGGGAGATCAATTGTTGTTGGTCTATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTGTTTGGTCCAGAAGAACACCAAATAAAATTGGATTGGCCTACAAGGAAAAACATCTGTGTTGGTATTGCCAAAGGTTTGGCATACCTCCATGAAGAATCAAGATTAAAAATTGTTCACAGGGACATCAAGACCACTAACGTGCTGCTTGATAAAAATCTCAAACCAAAGATATCTGACTTTGGTTTAGCCAAGCTCGATGAAGAGGACAATACCCACATAAGCACCCGAATTGCTGGAACTTATGGATACATGGCTCCTGAGTATGCCATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGAATTGTGGCCTTGGAAATTATAAGTGGGAGGAGCAATATGATTCAACGACATAAAGAAGCATCATTGTATCTTCTTGATTGGGCACACACGCTAAAAGAGAGTGGTAATCTAGTGGAGTTAGTTGATGGTAGATTGGGTTTGGAATTCAACAAAAAGGAGGTTATTACAATGATCAATGTGGCTCTTTTATGCACCAATGCAACTGCCTCCCTCAGGCCTACAATGTCCTCAGTGGTAAGCATGCTTGAAGGTAGATCTGTGGTTCAGGAGTTGATTTCAGAGTCAAGTGAGGCATTGGATGAGAAGAAGTTGGAAGTGATGCGACAGCATTACCAAGAGATAGAAGAAAACAATCTAAGTGAGAGTAATAACAGTCAGAGTCTCTCACTGGTTGACACATTGGCTACTTCATCTATTTCTGCAACAGATCTATATCCTGTAAACATGAATTCTTTATACTGGGAGAAAAGGGGATGGTGA 3072 0.4017 MNMASPHFFLIQLLLTFFFLSLAFGATLPEDEVQALKDIGETLGKKDWDFSVDPCSGERNWTSQTKVRGTENTVTCDCSFENATICHVTNILLKVQNLRGTLPVALVRLPYLQEIDLSRNYLNGTIPLEWGLLNLVRISLSANRLTGSIPPELANISTLQSLTLEFNQLSGNLPSELGNLPNIQRLLLTSNNFTGELPATFASLTTLQEVRLGDNNFSGSIPDFIQSWTSLQKLVIQGTGLSGPIPSGISLLESLTDLRISDIEGSDYFPFPQLNNLANLEILILRSCNINGTIPEYLGTMSNLQTLDLSFNRLSGQIPSSFEYGLRKTDYIYLTGNILTGPVPAWAEKDKNVDLSYNNFSMENSGQQPCQRGNVNLFASSSVDNSSESVSCLKSVACPKKYLVLTSLLVPESYSLHINCGGKQVTVDGNETYDEDTDNAGPARFHLSGKNWGFSSTGHFMDNDRAEYYIWLNQSKLFLADAEIYMDARVSPISLTYYGFCLGNGNYTVNLHFSEVMFTEDQTYNSLGRRIFDVYIQGNMVLKNFNIAEEAGGVNKAVTKSFTIMISSNTLEIRLYWAGKGTIGIPFKSVYGPLISAIAVNPNFIPPSENGSRISAGAVVAIVAGVVVFLVLVFGILRWRGFLGQKSSLAKELKGLKLQMGIFTLRQIKAATNNFNKANKIGEGGFGPVYKGNLSDGTIIAVKQLSSKSRQGNREFINELGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIKLDWPTRKNICVGIAKGLAYLHEESRLKIVHRDIKTTNVLLDKNLKPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIISGRSNMIQRHKEASLYLLDWAHTLKESGNLVELVDGRLGLEFNKKEVITMINVALLCTNATASLRPTMSSVVSMLEGRSVVQELISESSEALDEKKLEVMRQHYQEIEENNLSESNNSQSLSLVDTLATSSISATDLYPVNMNSLYWEKRGW* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0631 1023 Gene3D Phosphorylase Kinase; domain 1 643 750 - -
Vra2g0631 1023 CDD STKc_IRAK 681 948 - -
Vra2g0631 1023 Pfam Malectin domain 415 598 IPR021720 -
Vra2g0631 1023 SMART serkin_6 675 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0631 1023 SUPERFAMILY Protein kinase-like (PK-like) 659 952 IPR011009 -
Vra2g0631 1023 Gene3D Ribonuclease Inhibitor 268 371 IPR032675 -
Vra2g0631 1023 Gene3D Ribonuclease Inhibitor 192 267 IPR032675 -
Vra2g0631 1023 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515
Vra2g0631 1023 Gene3D - 411 603 - -
Vra2g0631 1023 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Vra2g0631 1023 ProSiteProfiles Leucine-rich repeat profile. 303 325 IPR001611 GO:0005515
Vra2g0631 1023 ProSiteProfiles Protein kinase domain profile. 675 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0631 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Vra2g0631 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 291 361 - -
Vra2g0631 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 290 - -
Vra2g0631 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 402 988 - -
Vra2g0631 1023 Gene3D Transferase(Phosphotransferase) domain 1 751 963 - -
Vra2g0631 1023 SUPERFAMILY L domain-like 74 345 - -
Vra2g0631 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 402 988 - -
Vra2g0631 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 76 290 - -
Vra2g0631 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 291 361 - -
Vra2g0631 1023 Pfam Protein tyrosine and serine/threonine kinase 678 946 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0631 Vra-Chr2 4973780 4981556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0631 19 1002 Receptor kinase-like Gene Family AT1G53420 54.032 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g0631 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0631 - - gmx:732563 1368.21