Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0628 ATGGTTCAAGAAGAAATGAGAAGGGGTCCGTGGACAGAAGAGGAGGACTTGAAACTGGTGTATTTTGTAAACATGTTTGGAGATCGTAGGTGGGACTTTATAGCAAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGGAAGCTCACATCCCAAGAAGAACACCTCGTCATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAGCTACCAGGTCGCACTGACAACGAGATTAAGAATTTCTGGAGGACTTTCATGAGGAAAAAGAAGGCTCTAGAGAAAAAGCGAGCATCACCATCCTCCTCCTCCTCATCATCTTCACTGTCCTCAATCAACCATGCTGTGGATTCTCATGCTTCCAAAGAGGTTGGAGAAGAGAGCTTTTACGACACAGGTGGATATGGACATGATGATGTAATGGGGTTGATCAGTGCTGGAGAAGAGTTCTCTTTGGATGATATATGGAAAGATATTGTTTTGTCAGAAGATAATAATAACAATATTCAGCAAGAACCTCTGTACGAATTGCAGAGTCAAGAGGGTTGCAACTTCTCTTCTCCACCTGCAATGATTTATTCTCCATCATCATGGGAGTACAATTCTTCTCACCCTTTATGGGTGATGGATGAAGAAGAGAGTAACAAGATGTTGTTTCCTGCAACAAGTGACCAATACTATTATTCCTGCTATGAACAGGGGAATGCATTTCTAACTGGCTAA 780 0.4256 MVQEEMRRGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTSQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNFWRTFMRKKKALEKKRASPSSSSSSSSLSSINHAVDSHASKEVGEESFYDTGGYGHDDVMGLISAGEEFSLDDIWKDIVLSEDNNNNIQQEPLYELQSQEGCNFSSPPAMIYSPSSWEYNSSHPLWVMDEEESNKMLFPATSDQYYYSCYEQGNAFLTG* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0628 259 MobiDBLite consensus disorder prediction 117 136 - -
Vra2g0628 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vra2g0628 259 CDD SANT 65 106 IPR001005 -
Vra2g0628 259 MobiDBLite consensus disorder prediction 112 143 - -
Vra2g0628 259 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vra2g0628 259 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Vra2g0628 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vra2g0628 259 SMART sant 60 108 IPR001005 -
Vra2g0628 259 SMART sant 7 57 IPR001005 -
Vra2g0628 259 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Vra2g0628 259 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vra2g0628 259 Gene3D - 64 107 - -
Vra2g0628 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 239 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra2g0628 259 CDD SANT 10 55 IPR001005 -
Vra2g0628 259 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vra2g0628 259 Gene3D - 8 60 - -
Vra2g0628 259 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0628 Vra-Chr2 4962407 4963807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0628 1 257 MYB Transcription Factor Family AT5G59780 52.140 4.86e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0628 Myb_DNA-binding 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0628 K09422 - gmx:100776886 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0628 2 4962407 4963807 Vra2g0628 2 4962407 4963807 ECH
Vra2g0628 2 4962407 4963807 Vra4g0259 4 5254305 5259132 PCT