Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0625 ATGCAATTAACGAAAGGCAACCCTCTTCTTTTCCCCTTATCTAGATTTCTGTGTGCGCGTCATCATTCATCAGCCAAATTGTTTGTCGCAGGACTTTCCTGGGATACCAATGAATCGATTCTGAGAGATGCCTTTGAAAAACATGGGAAAATCATTGAAGTTAGAGTAATATGTGATCATGTGACTGCGAAATCAAGAGGTTATGGATTTGTGCGGTTTGATTCTGAAACTGCAGCTGATACAGCTCGCAAAGAGATGAATGGCCAGATACTGGATGGCAGACGCATTCGGGTTACTTATGCACACAAAGGCTAG 315 0.4254 MQLTKGNPLLFPLSRFLCARHHSSAKLFVAGLSWDTNESILRDAFEKHGKIIEVRVICDHVTAKSRGYGFVRFDSETAADTARKEMNGQILDGRRIRVTYAHKG* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0625 104 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Vra2g0625 104 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 14 103 - -
Vra2g0625 104 Gene3D - 17 104 IPR012677 -
Vra2g0625 104 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 14 103 - -
Vra2g0625 104 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vra2g0625 104 SUPERFAMILY RNA-binding domain, RBD 22 103 IPR035979 GO:0003676
Vra2g0625 104 SMART rrm1_1 26 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0625 Vra-Chr2 4922749 4923829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0625 20 98 Eukaryotic Initiation Factors Gene Family AT4G34110 29.114 1.92e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0625 K13195 - gmx:100306540 163.31