Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0611 ATGGAGAGTGGAAATGAAGAGTTGGAGATAGGAGGGTCTAATGGGGTTGCAGCCAGTTCACGGTGGAACCCTACAAAAGAGCAAATAACCATGCTAGAGAACCTGTATAAGCAGGGAATAAAGACTCCCAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGCGACAGAAGCAGAAGCAAGAAACCATCGCTTACTTCAATCGCTTTCTTCATACTCCTCAGCCCTTTTTCTCTCCCTCAATTTGTCCAAACGGCCTGTGCCCTCCATATTGCATACCTCAGGTGCAGAGTGAAAATGGGTTTTATCCCCCACATTCAAAGGTGCTTGTACCAGTGGGTTTTAGGAGAAGACCATCTGAGATATTTGTGCCCACAGACATGTCAAACGTTATCAGCAACGGTCCGCTGTTATACGAAGGCATGCAAGAGAGAATCTCGGATTGCAACTTGAGCTACAGTAACCAACAAACGTTGGATCTTTTTCCTCTGCACCCAACTGGTATTTTGGAAGGGAAAACAACATACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTCCATTGATATCAACGAAAATGATCCTTCCCCTCTTAACCAACCCTTCTTTGATTTTTTTACTACTTCTGGACAAGGTTCTTAG 714 0.4482 MESGNEELEIGGSNGVAASSRWNPTKEQITMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPSICPNGLCPPYCIPQVQSENGFYPPHSKVLVPVGFRRRPSEIFVPTDMSNVISNGPLLYEGMQERISDCNLSYSNQQTLDLFPLHPTGILEGKTTYQVSSLASVSADSSIDINENDPSPLNQPFFDFFTTSGQGS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0611 237 Gene3D - 19 87 - -
Vra2g0611 237 Pfam Homeodomain 19 79 IPR001356 GO:0003677
Vra2g0611 237 CDD homeodomain 21 81 IPR001356 GO:0003677
Vra2g0611 237 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 235 IPR044555 GO:0003700|GO:0099402
Vra2g0611 237 ProSiteProfiles 'Homeobox' domain profile. 15 80 IPR001356 GO:0003677
Vra2g0611 237 SUPERFAMILY Homeodomain-like 20 86 IPR009057 -
Vra2g0611 237 SMART HOX_1 17 84 IPR001356 GO:0003677
Vra2g0611 237 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0611 Vra-Chr2 4832026 4834395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0611 15 231 Wox Gene Family AT5G59340 45.228 6.26e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra2g0611 Homeodomain 4.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0611 - - pvu:PHAVU_011G064900g 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0611 2 4832026 4834395 Vra2g0611 2 4832026 4834395 ECH